Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01094 ATGATTCTGTGCCGTTCTGCTTTGATGCTTCATCTTCAAACACCATCAATTGGGTCCCAAGTGTTGTTCCAGTTCAAGCATGCCTACTCCTCGTTTCTCTGCAATTCTACCTCACATGGAATCCGCTTCTTTTCGCTGACCCGTCTACGCCAAAGGCAATCCAGGACCTTCGGAACCGCTGTTGCAGCAGTAACAGAGACAAAGGGGAGAGACACGTTCTTCGCTGAAGAAAACATTTCCTGGAATTCACTTGGTTTATCAGATACAATTTCCCAAGCTCTCTCTAATATCGGTCTCGAACGACCGTCTCTGGTTCAGGCTTCTTCCATTCCATGTGTGCTTTCAGGAAAGGATATAGTTATTGCAGCGGAGACTGGCAGTGGTAAAACATACAGTTACTTAGTTCCTCTAATTGAAAAGCTACACTGTTCCCATTATAGTTCCGTAAACACTGCCTCTGATCAACAAGTGTCTCCGCCCCGTCAACTTCTGCTTGTTCTTTGTCCAAATGTACAACTGTGCGAGCAAGTGGTTCGGATGGCTAACTGTCTGTGTGGAGAGAACGGCAAACCATTTGTGAATGTGGCAGCTGTCTGTGGCAGACAGGGATGGCCAACTCGCGAACCTGATGTTATTGTGTCGACACCTGCCGCTCTTCTAAATTATGTTGACCGAGATAAGCTCCACCGCATGGAATTTATGCGCGGAGTTAAACATGTGGTGTTTGATGAAGCTGATATGCTTCTTTGTGGGAGCTTCCAGAATAAAGTAATCCGTCTGATACACTTGCTTCGCTATGATGAAAAACTCTTGTCTCGATCAAAAGAATCAACAGCAGATTTGCCAATGGAATCGGAATCTGCCTTCCTGTCACATGATGCTTCAGATGGAGAGGAGGAACTGCTAACTGAAGCCATTTCAGAAGAGGAGGATGATACTCAGAAAATGGTTGACGTTAACAATGAAGCTGAATCTATCAAAAGAAGAGAGTGGTGGAGAGTGAGGAAAATTTATGAGCGTAGTAAACAGTACATTTTTGTGGCAGCTACGCTTCCAGtgaatggaaagaaaacagCTGGTGGaatattgaaatatatgttTCCTGATGCCAAATGGGTTAGTGGAAACTATCTCCATTGTCACAATCCAAGATTAGAGCAAAGGTGGATTGAAGTGACAGTTGATGCACAGGTGGATGAACTCATAAAGGCTGTTAATCAAGGTTTCAAATCTGAAGACTTGGATAATGCTGGTGGTGTTAGCCGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCTATTGCAAAGATATTGCTCAGATCTGGGATTGAATGTTTACGTTATCATAAGGATTGCACCTTGGAGGAACGAGCAAAATCCTTAGTTGAATTCCAAGAGAAAGGTGGTGTTCTTGTATGTACGGATGCAGCTGCTCGTGGCGTTGATATTCGAAATGTCTTACATGTCATTCAGGCAGATTTTGCTACTTCTGCTGTAGACTTCTTGCATAGAGTTGGTCGCACAGCCAGAGCTGGTCAATTTGGACTCGTGACTAGCATGTACACTGAATCCAACAGAGAGCTTGTTGATGCAGTTCGTCGAGCAGGGAAACTGGGTCAACCTGTGGAGACAGCATTTAGCAGGAAAAGAAGCTTCCGTAACAAGCTCAAGAAGAAGGGTGCTAACAAAGCCAGAGATTCAGAAACTATTAAAGAGAATGCCCTTTCATA 1736 0.4366 MILCRSALMLHLQTPSIGSQVLFQFKHAYSSFLCNSTSHGIRFFSLTRLRQRQSRTFGTAVAAVTETKGRDTFFAEENISWNSLGLSDTISQALSNIGLERPSLVQASSIPCVLSGKDIVIAAETGSGKTYSYLVPLIEKLHCSHYSSVNTASDQQVSPPRQLLLVLCPNVQLCEQVVRMANCLCGENGKPFVNVAAVCGRQGWPTREPDVIVSTPAALLNYVDRDKLHRMEFMRGVKHVVFDEADMLLCGSFQNKVIRLIHLLRYDEKLLSRSKESTADLPMESESAFLSHDASDGEEELLTEAISEEEDDTQKMVDVNNEAESIKRREWWRVRKIYERSKQYIFVAATLPVNGKKTAGGILKYMFPDAKWVSGNYLHCHNPRLEQRWIEVTVDAQVDELIKAVNQGFKSEDLDNAGGVSRTMVFANTVEAVEAIAKILLRSGIECLRYHKDCTLEERAKSLVEFQEKGGVLVCTDAAARGVDIRNVLHVIQADFATSAVDFLHRVGRTARAGQFGLVTSMYTESNRELVDAVRRAGKLGQPVETAFSRKRSFRNKLKKKGANKARDSETIKENALS 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01094 578 CDD SF2_C_DEAD 385 523 - -
Bva11g01094 578 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 79 107 IPR014014 GO:0003724
Bva11g01094 578 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 47 554 - -
Bva11g01094 578 SMART helicmild6 434 514 IPR001650 -
Bva11g01094 578 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 369 IPR014001 -
Bva11g01094 578 Pfam DEAD/DEAH box helicase 105 268 IPR011545 GO:0003676|GO:0005524
Bva11g01094 578 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 397 562 IPR001650 -
Bva11g01094 578 Gene3D - 47 366 IPR027417 -
Bva11g01094 578 SMART ultradead3 98 388 IPR014001 -
Bva11g01094 578 MobiDBLite consensus disorder prediction 557 578 - -
Bva11g01094 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 526 IPR027417 -
Bva11g01094 578 CDD DEADc 90 271 - -
Bva11g01094 578 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 47 554 - -
Bva11g01094 578 Pfam Helicase conserved C-terminal domain 421 514 IPR001650 -
Bva11g01094 578 Gene3D - 389 578 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01094 Bva-Chr11 12279551 12283850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01094 86 535 Eukaryotic Initiation Factors Gene Family AT5G11200 23.651 1.45e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01094 - - gmx:100789323 830.476