Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01088 ATGGAAAAGGATGTCtgtgttctttcttcttcatgggATGGAGAAAATGGCCATTCTGTGGAGAAGAGGCTGAAATTGTTTGGCTTTGAGCTGAACCCTTGCTCTATGAACAATGATGGATGTGTCAAAGAAGCTgtagaaggagaagaaagcatCAACTCCTCAAACTCAGTTTCATCTGGTGGCGATCAGAAAACAACAGAGGAGCAAGAGAAGAGCTCAACCTGTAGAGACCCAGATGAGAGAAAGTTCGAGTGCCAGTATTGTTTCAAGCAATTTGCAAATTCACAAGCGTTAGGAGGCCACCAAAATGctcacaagaaagaaagaatgaagaagaagaggttgCAGCTTCAAGCCAGAAAAGCCAGCATAAACTATTACCTACAACCTTTCCAAAGCAACCCTGCTTCTGCTCACCATGGCTCTACTCATTGGTTCTATGATCCCTCTTCCTATAACAACTCTGAGTTCACTCTCTATGAAGAATCTCAGATCAGCTTCAATTCAAATGACCAAGTAGGCTACCTTAATGGGTCTGATCAGAAATCCAAGTGGTATTCTGTGTCACCCCATGTCCCTTCCCAGCAAGATTCATCTATGCTCACTTTTTCACATTCATATAATAACAGTCCTTCCATGTTCAAGCCTTGCCACTTCCCTGCTTCAAACCAGAGCCACAGTAAAGCTTTGGATCTTCAACTAGGCCTCAACATGCAGTCAAATACAAGAAGCTCTCTTAGAAGGACGTA 752 0.3896 MEKDVCVLSSSWDGENGHSVEKRLKLFGFELNPCSMNNDGCVKEAVEGEESINSSNSVSSGGDQKTTEEQEKSSTCRDPDERKFECQYCFKQFANSQALGGHQNAHKKERMKKKRLQLQARKASINYYLQPFQSNPASAHHGSTHWFYDPSSYNNSEFTLYEESQISFNSNDQVGYLNGSDQKSKWYSVSPHVPSQQDSSMLTFSHSYNNSPSMFKPCHFPASNQSHSKALDLQLGLNMQSNTRSSLRRT 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01088 250 MobiDBLite consensus disorder prediction 46 77 - -
Bva11g01088 250 Gene3D Classic Zinc Finger 56 135 - -
Bva11g01088 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Bva11g01088 250 PANTHER ZINC FINGER PROTEIN 5 13 240 IPR044299 GO:0010090
Bva11g01088 250 PANTHER ZINC FINGER PROTEIN 5 13 240 - -
Bva11g01088 250 SUPERFAMILY beta-beta-alpha zinc fingers 80 111 IPR036236 -
Bva11g01088 250 MobiDBLite consensus disorder prediction 49 64 - -
Bva11g01088 250 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01088 Bva-Chr11 12254834 12255813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01088 82 193 C2H2 Transcription Factor Family AT1G10480 47.967 1.10e-19 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva11g01088 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01088 - - gmx:100527006 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01088 11 12254834 12255813 Bva11g01088 11 12254834 12255813 ECH