Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01075 ATGAAGAGGTCAAGAGACGATGTTTTTATGGGTTCTCAACTCAAACGGCCTATGGTGTCTTCTCGAGGAGAAGCCTCCGGGCAACCTCAGATGATGGGAGGAGGTGGTCAAAAACTAACTACAAATGATGCCTTAGCATATCTAAAGGCAGTAAAGGATATATTTCATGATAAGAGGGAAaagtatgatgattttttagAAGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACCGCAGGTGTCATAGCAAGAGTGAAGGATCTGTTTAAAGGGCATAGAGATCTAATTTTGGGATTTAACACCTTCTTGCCCAAGGGATATGAAATTACACTCCCACTGGAGGATGAACAACCTCCGCAAAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACaaaattaagAATCGCTTTCAAGGTGATGACCATGTTTATAAGTCATTTTTAGACATATTGAATATGTacagaaaggaaaacaagTCTATTCACGAGGTCTACCAAGAGGTTGCTGCACTTTTCCAAGACCACCCAGACCTTCTTGATGAATTTACTCATTTTCTTCCTGATGCTTCTGCAACAGCCTCTCTACATTTTGCTCAATCTGCTCGGAATTCTATGCTTCGTGATAGGAGCTCTGCAATGCCAGCAGGGCGGCAAATGCACATTGACAAGAGAGAAAGGGCCATAGCATCACATGGTGATCGTGATCTCAGTGTAGACCGTCCAGATACAGATCATGACAGACCTTTGATGAGGGACAAGGAGCAGAGGAGGCTGAAGGAAAAGGACCGCAGAGAAGATAGAGAGTTTGATAATGATGGTAAAAGGGATTTCAATATGCAGCATTTTCTCCACAAGCGGAAATCTGGTCATAGGGCTGAAGATTCTGGTGCTGACCCATTGCACCAAGGAGGGGATGTTGATGAACATTTTGACATGCGCCCGATGTCATCTGCTTGTGATGATAAAAGTTCTGTTAAAAGTATGTACAGTCAAGAGCTTGCTTTCTGTGACAAAGTCAAGGAGAAATTACGAAATCCTGAGGATTATCAGGAATTTTTGAAGTGTCTACATATCTATAGTAGGGAGATCATTACCCGACAAGAATTGCAGTCATTGGTGGGTGATTTACTGGGAAAATATCCAGACATTATGGATGAGTTTAACGAATTTTTGACACAATGTGAAAAGAATGAAGGATTCCTAGCTGGTGTtatgaataataaaaAGTCCATATGGAGTGAAGGACAAAAACCAGTTAAAGTGGAGGAGCGGGAAGGagatcgtgatggggatagggATAGGGATGACGAAATTAAAGAAAGGGATCGCGAAACCCGAGAAAGGGACAAATCTACTGCCTTTTCTAACAGGGATGTTTCTGGTTCTAAGATGTCTTTGTTTTCCAGCAAGGATAAGTATTGGGCTAAACCTATAAACGAGTTGGACCTTTCTAACTGTGAGCAGTGCACTCCCAGTTACCGACTCCTACCCAAAAATTACCCAATACCTTCAGCTAGCCAGAGAACAGAGCTTGGTGCTGAAGTATTGAATGATCATTGGGTCTCTGTCACTTCAGGAAGTGaggattattcttttaaacacATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTGGATATGTTGTTAGAGTCTGTGAATGTGACAACCAAGCGAGTAGAAGAGCTCTTAGATAAgatcaataataatacaattaaagGAGACAGTCCAATTTGCATTGAGGAGCACTTAACAGCTCTAAATCTGAGGTGCATTGAACGATTATATGGTGACCATGGGCTTGATGTGATGGATGTGTTAAGAAAGAATGCACCTCTAGCCTTGCCAGTCATATTAACTCGCCTGAAGCAGAAGCAGGAAGAGTGGGCTAGGTGTCGTGctgattttaataaagtttgggCTGAAATATATGCTAAGAACTATCACAAGTCTCTTGATCATCGGAGCTTCTACTTCAAGCAACAGGATACAAAAAGCTTGAGCACAAAAGCCTTACTGGCAGAAATCAAGGAAATCAGTGAGAAGAAACGCAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGGCCTATTCTTCCAAATCTGGAATTCAAGTATCCCGATCCTGATATTCATGAAAATCTGTATCAACTCATAAAGTATTCCTGTGGTGAAATTTGCACAACTGAACAGTTGGATAAAGTTATGAAGATTTGGACAACCTTCTTAGAAGCCATGCTTGGTGTTCCTCCTCGACCCCAGGGACCTGAGGATACTGAAGATGTTGTCAAGGTTAAAAGTAATTCTGTCAAAAATGGCACTACAAGTGTTGCTGAGAGTGATGGTAGTCCTAGTGCTGGTGCTaccaaacaattaaatacTGCTAGAAATGGGGATGAGAGTATTCCACTAGAACAATCAAATTCATGCAGAGCACGGCAGACAAATGGGGACAGCGGGATTAAAGAAGATAACTGTTTTGATGTAGACCGTACTTCACGCAAATCTGAAGCTTTGGGAAACAGTATGCAGCATGGTAAAATACATAGTAGTGTAGCTATGCCTGATGAAGTATCCGGGTTCAACAAGCAAGATCATTCCTATGAACGGTTAGCACAGGCCAATCCCTCACTACCCACTGGAATAGATCAAAGTAATGCAAGAACAAACATAGATAGTGCATCAGGGTTCAACACTGCTCCATATAGACCTGGTAATGTTGCTGTTGAAGGAGGACTTGAGTTACCTTCATCAGAGGGTGGTGATTCTACAAAATTAGTTACATCCACAACTGGGGCAACATGTGAAGCCAGCAAAGGTCAAGGATATCAAGAAGAATCTGTTGGACACTTCAAAAGTGAAAGAGAAGAGGGTGAATTATCTCCAAATGTTGATTTTGAGGAGGATAATTTTGCAGTTTATGGAGATGGTGGTTTGGAAGCAGCccataaaggaaaggaaagtgGTGTGAGTCAGCAATACCCCAATAGACGTGGGGAAGAAGTTTGTTGTGGTGAAGCAGGAGGTGAAAATGGTGCTGATGCTGATGATGAGGGAGAAGAAAGTCATCACAGGTCTACAGAGGACAGTGAAAATGCTTCTGAAAATGGTGATGTTTCAGGAAGCGAGTCTGCTGATGGGGAGGAGTGTTCTCGGGAAGAACGTGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATGGCTGATGCCAATGATGTTGAAGGAGATGGAACCTTATTACCATTTTCAGAACGCTTTCTACGAACTGTAAAGCCTCTTGCAAAGTATGTTCCGCCAGCATTGCATGAGAAAGAAAGGGATTCTCGAGTTTTTTATGGAAATGATTccttttatgttcttttcaGACTTCATCAAACATTGTATGAGAGGATACAATCAGCAAAGATTAACTCATCATCTGCTGAAAGAAAGTGGAGGTCTCCAAATGACACTAGCTCCACTGATCAATATGCCAGGTTCATGGATGCTCTTTACAATTTACTGGACGGTTCTTCTGACAATACAAAATTTGAGGATGACTGTCGAGCTATTATTGGAACTCAATCATATCTCTTATTCACGTTGGACAAGCTGATTTATAAACTTGTTAAACAGCTTCAAGCAATTGCAACTGATGAGATGGACAACAAGCTCCTTCAACTTAATGCATATGAGAAATCAAGAAAATCTGGAAGATTTGTGGATATAGTTTATCATGAGAATGCCCGTGTTCTTCTTCATGATGAGCTCATATATCGTATTGAATGTTCCTCTACACCAACTCGGTTGTCCATCCAACTGATGGACTATGGACATGATAAGCCTGAAGTGACTGCTGTATCAATGGACCCAAATTTTTCAGCTTATCTGCACAATGATTTCCTTTCTGTTGTTCCTGACAAAAAGGAGAAGTCAGGGATTTTCCTGAAGAGAAACAAACGGAGATATGCTTGTGGTGATGAATTTTCAAGCCAGGCTATGGAAGGCCTACAAGTAATTAATGGTCTGGAGTGTAAGATATCTTGCAATTCATCTAAGGTTTCATACGTCTTAGATACGGAAGATTTTCTATTTCggatgagaaagaaaaggagaccTTTGCATCAGAACAGCTCAAGCCATGAACAAGCAAAGTCTTCAAACATTAAATCAAGCAGAATGCAACGGTTCCAAAAATTGTTTTCCATTACATA 4241 0.394 MKRSRDDVFMGSQLKRPMVSSRGEASGQPQMMGGGGQKLTTNDALAYLKAVKDIFHDKREKYDDFLEVMKDFKAQRIDTAGVIARVKDLFKGHRDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFEEAINFVNKIKNRFQGDDHVYKSFLDILNMYRKENKSIHEVYQEVAALFQDHPDLLDEFTHFLPDASATASLHFAQSARNSMLRDRSSAMPAGRQMHIDKRERAIASHGDRDLSVDRPDTDHDRPLMRDKEQRRLKEKDRREDREFDNDGKRDFNMQHFLHKRKSGHRAEDSGADPLHQGGDVDEHFDMRPMSSACDDKSSVKSMYSQELAFCDKVKEKLRNPEDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDIMDEFNEFLTQCEKNEGFLAGVMNNKKSIWSEGQKPVKVEEREGDRDGDRDRDDEIKERDRETRERDKSTAFSNRDVSGSKMSLFSSKDKYWAKPINELDLSNCEQCTPSYRLLPKNYPIPSASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINNNTIKGDSPICIEEHLTALNLRCIERLYGDHGLDVMDVLRKNAPLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFKYPDPDIHENLYQLIKYSCGEICTTEQLDKVMKIWTTFLEAMLGVPPRPQGPEDTEDVVKVKSNSVKNGTTSVAESDGSPSAGATKQLNTARNGDESIPLEQSNSCRARQTNGDSGIKEDNCFDVDRTSRKSEALGNSMQHGKIHSSVAMPDEVSGFNKQDHSYERLAQANPSLPTGIDQSNARTNIDSASGFNTAPYRPGNVAVEGGLELPSSEGGDSTKLVTSTTGATCEASKGQGYQEESVGHFKSEREEGELSPNVDFEEDNFAVYGDGGLEAAHKGKESGVSQQYPNRRGEEVCCGEAGGENGADADDEGEESHHRSTEDSENASENGDVSGSESADGEECSREERDNKAESEGEAEGMADANDVEGDGTLLPFSERFLRTVKPLAKYVPPALHEKERDSRVFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWRSPNDTSSTDQYARFMDALYNLLDGSSDNTKFEDDCRAIIGTQSYLLFTLDKLIYKLVKQLQAIATDEMDNKLLQLNAYEKSRKSGRFVDIVYHENARVLLHDELIYRIECSSTPTRLSIQLMDYGHDKPEVTAVSMDPNFSAYLHNDFLSVVPDKKEKSGIFLKRNKRRYACGDEFSSQAMEGLQVINGLECKISCNSSKVSYVLDTEDFLFRMRKKRRPLHQNSSSHEQAKSSNIKSSRMQRFQKLFSIT 1413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01075 1413 Pfam Sin3 family co-repressor 491 583 IPR013194 -
Bva11g01075 1413 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Bva11g01075 1413 MobiDBLite consensus disorder prediction 782 836 - -
Bva11g01075 1413 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Bva11g01075 1413 PANTHER SIN3B-RELATED 1 1390 IPR039774 GO:0003714
Bva11g01075 1413 MobiDBLite consensus disorder prediction 1032 1047 - -
Bva11g01075 1413 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Bva11g01075 1413 MobiDBLite consensus disorder prediction 1380 1401 - -
Bva11g01075 1413 ProSiteProfiles PAH domain profile. 329 398 IPR003822 GO:0006355
Bva11g01075 1413 Pfam Paired amphipathic helix repeat 351 395 IPR003822 GO:0006355
Bva11g01075 1413 Pfam Paired amphipathic helix repeat 146 190 IPR003822 GO:0006355
Bva11g01075 1413 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Bva11g01075 1413 Gene3D Paired amphipathic helix 327 400 IPR036600 GO:0006355
Bva11g01075 1413 MobiDBLite consensus disorder prediction 418 462 - -
Bva11g01075 1413 MobiDBLite consensus disorder prediction 998 1092 - -
Bva11g01075 1413 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Bva11g01075 1413 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Bva11g01075 1413 SUPERFAMILY PAH2 domain 332 398 IPR036600 GO:0006355
Bva11g01075 1413 Pfam C-terminal domain of Sin3a protein 1127 1373 IPR031693 -
Bva11g01075 1413 MobiDBLite consensus disorder prediction 1060 1080 - -
Bva11g01075 1413 MobiDBLite consensus disorder prediction 419 458 - -
Bva11g01075 1413 MobiDBLite consensus disorder prediction 231 284 - -
Bva11g01075 1413 SUPERFAMILY PAH2 domain 119 192 IPR036600 GO:0006355
Bva11g01075 1413 MobiDBLite consensus disorder prediction 782 843 - -
Bva11g01075 1413 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1390 - -
Bva11g01075 1413 MobiDBLite consensus disorder prediction 951 981 - -
Bva11g01075 1413 SMART hdac_interact2seq4b 489 589 IPR013194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01075 Bva-Chr11 12176672 12186355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01075 28 142 WRKY Transcription Factor Family AT4G12020 52.137 3.63e-25 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva11g01075 Sin3a_C 2.7e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01075 K11644 - mnt:21394293 2133.22