Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01040 ATGGAATCGCAGTTGGGATTGATAGACCAATCATTCAGTAACTGGTACTCGAGCTACGTCCACGAAGCACTCGACGAATtgccttataattttactatcaCCGACCCCTCCATTTCTGGCCACCCAATTGTTTTTGCAAGCCGTGGCTTCCTGAAAATGTCGGGGTATTCTAAAGACGAGGTGGTTGGTAAGAATGGGAGGATTTTTCAAGGACCGGACACCTGTAGAAGATCAATAATGGAAATTCGAGAGGCGATAAGGGAAGAGAGAACCATtcagataaattttttgaattatcgTAAAGATGGGACACCCTTTTGGATGCTATTTCATATGAGCCCTGTCTTTAGCAAGGATGATGGGAGGGTGACCCACTACGTCGCAGTTCAGGTACCAATATCGAAAAAACGGAGGAGTACTGGTTGTGGGTATGGAAGAATTGGAGTTAGTTTGTCTGAGGATGGCTCTCAAGTGCaggattttgtttttgggtcTTGTAGGAAGGAAGTGTGCTCGGATTCTTTGCTGGAACTGGGTCGTGTTTTGTCCCTGCAACAAGTTTTGGAACATGATATTAGAGAATCAGTGTCTGAAGAGCCATGCGAGGCAAGTGATGTTGAGAAGATAAAATCTATGACTGCCATGGACGACATCTTTTCTTTGCTGACTCACTACAGCGAGTCAACTGGCAGATTGGTGTGTCGAAAGAGATGTAGCATCCCTGACGTCGATCTTCTTAGCTCATCCTTGATTATTTCTCTTGGTAGAATCAAACACAGCTTTGTATTAACTAATCCGCACTTACCTGACATGCCCATTGTGTACGCCAGTGATGCCTTCTTGAAATTGACAGGTTATGCAAGGGACGAAGTGTTGGGGCGCAATTGTAGATTTTTAAGTGGAGCGAGTACTGATACTTCAACTTTATGCCTGATAAGGGAAAGCATTAAAACTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATGAAAGCTCTTTTTGGAATCTTCTTCACATATCACCTGTTCGTGATGCTTACGGCAAGATAGCATACTTTGTGGGAGTTCAAATAGAAGACTCTAATGGTAAGACGCTGGAGAGACAGGGATTGAGCCCAGAGAAGAGGCTGCTAAGCGTGGTTGGTTCAGTCAAGATTGCAGTGAGGAGTTCATCAATGAGTAATGCTGGATCTTCAAAGTCATA 1211 0.4211 MESQLGLIDQSFSNWYSSYVHEALDELPYNFTITDPSISGHPIVFASRGFLKMSGYSKDEVVGKNGRIFQGPDTCRRSIMEIREAIREERTIQINFLNYRKDGTPFWMLFHMSPVFSKDDGRVTHYVAVQVPISKKRRSTGCGYGRIGVSLSEDGSQVQDFVFGSCRKEVCSDSLLELGRVLSLQQVLEHDIRESVSEEPCEASDVEKIKSMTAMDDIFSLLTHYSESTGRLVCRKRCSIPDVDLLSSSLIISLGRIKHSFVLTNPHLPDMPIVYASDAFLKLTGYARDEVLGRNCRFLSGASTDTSTLCLIRESIKTEQPCTVRILNYRKDESSFWNLLHISPVRDAYGKIAYFVGVQIEDSNGKTLERQGLSPEKRLLSVVGSVKIAVRSSSMSNAGSSKS 403
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01040 403 PANTHER PROTEIN TWIN LOV 1 8 399 - -
Bva11g01040 403 SUPERFAMILY PYP-like sensor domain (PAS domain) 32 130 IPR035965 -
Bva11g01040 403 Pfam PAS domain 260 359 IPR000014 -
Bva11g01040 403 Pfam PAS domain 41 134 IPR000014 -
Bva11g01040 403 PANTHER PROTEIN TWIN LOV 1 8 399 - -
Bva11g01040 403 ProSiteProfiles PAC domain profile. 90 145 IPR000700 -
Bva11g01040 403 Gene3D PAS domain 260 401 - -
Bva11g01040 403 Gene3D PAS domain 30 147 - -
Bva11g01040 403 ProSiteProfiles PAS repeat profile. 273 295 IPR000014 -
Bva11g01040 403 CDD PAS 43 133 IPR000014 -
Bva11g01040 403 SMART pac_2 323 363 IPR001610 -
Bva11g01040 403 SMART pac_2 93 136 IPR001610 -
Bva11g01040 403 TIGRFAM sensory_box: PAS domain S-box protein 273 361 IPR000014 -
Bva11g01040 403 TIGRFAM sensory_box: PAS domain S-box protein 43 137 IPR000014 -
Bva11g01040 403 SUPERFAMILY PYP-like sensor domain (PAS domain) 265 359 IPR035965 -
Bva11g01040 403 CDD PAS 269 358 IPR000014 -
Bva11g01040 403 ProSiteProfiles PAS repeat profile. 16 89 IPR000014 -
Bva11g01040 403 ProSiteProfiles PAC domain profile. 320 374 IPR000700 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bva11g01040 Bva-Chr11 11967449 11971533 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01040 17 398 AGC Kinase Gene Family AT5G58140 32.394 5.26e-62 213
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01040 - - csin:114286684 526.554
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01040 11 11967449 11971533 Bva11g01040 11 11967449 11971533 ECH