Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01034 ATGGGAAAATTACATAGTACTGTCttgcttgctttctttttcgtCTCCTGTTTGATAGCCACCACACGTGGCAATGTATTGGAGACTCCAGAGTACTGGGAAGAGCAAAATAAATCATCTGATGGGTATTGGAGGCAAAGAGCCATGGAAGCTGAAAAGATCAATGCAAAAAATGTTGTTCAAGACCCTTACCAAGTCAGTGCTGATCTCTCTTCTAGCGTTCACAAGGTCTTAGATAATAGTGAGAAAAAGAATGGCACAAGAATGTTGATAGGGAAAAATAGAGGTCGACAATGCGAGGCCGTTAACCCCATTGACAAATGCTGGAGGTGTGATCCCAACTGGGCTAACAATCGGCAAAGACTCGCCGATTGCGCAATGGGCTTCGGCCGGAAAACCACCGGTGGAAAGGGCGGAAGAGTCTATGTTGTGACTGATTCCTCAGACACTGATCTGATAAATCCCAAACCTGGCACCCTTCGTCACGCAGTTATACAAACGGAACCATTAGGAGCCAATGTTCGCATTGCTGGTGGTGCTAGTATAACCCTACAGTTTGTTGAGAATGTGATCATCCATGGGATTCGTATTCATGATATTCATCCTGGCAATGGGGGGATGATTGCAAGTTCTGTTAACCATTATGGTTTCAGGACTAGGAGTGATGGTGATGGAATCAACATCTTTGGCTCCAGCCGTATTTGGGTTGACCATTGCTCAATGAGAACTTGCACTGATGgaataattgatgtaatttcaGGATCCACTGCTGTTACCATATCCAACAACCATTTCACAAATCACAATGAgGTGATGCTATTTGGTGCAAGTGGCATGGAAACCAGAGACAAGAATATGCAAGTCACAGTGGCATTCAACCACTTTGGTAAGAACCTAATCCAAAGAATGCCAAGGTGCAGATTTGGTTTCATCCATGTGGTTAACAATGACTACACTCATTGGGAAATGTACGCCATTGGTGGTAGCCATGCACCTACTATCATTAGTGAGGGTAACCGATTCATTGCCCCTCCTAACCGCTTTGCCAAAGAGGTAACAAAGAGGGAATATACACAAGAGAGCGAGTGGAAGAATTGGCAATGGAGATCAATAAACGACGTATTTATGGATGGAGCATTTTTCGTACAATCTGGTCCTGAGGTAATCAGGACACCATCCGTCTCACAAGACGATATGATCTCTGCTCGACCTGGGACAATGGTGAACGTACTCACAGTAGACGCTGGCTTCCTGAATTGTGTAGTTGGTAGCCCTTGTTA 1280 0.4352 MGKLHSTVLLAFFFVSCLIATTRGNVLETPEYWEEQNKSSDGYWRQRAMEAEKINAKNVVQDPYQVSADLSSSVHKVLDNSEKKNGTRMLIGKNRGRQCEAVNPIDKCWRCDPNWANNRQRLADCAMGFGRKTTGGKGGRVYVVTDSSDTDLINPKPGTLRHAVIQTEPLGANVRIAGGASITLQFVENVIIHGIRIHDIHPGNGGMIASSVNHYGFRTRSDGDGINIFGSSRIWVDHCSMRTCTDGIIDVISGSTAVTISNNHFTNHNEVMLFGASGMETRDKNMQVTVAFNHFGKNLIQRMPRCRFGFIHVVNNDYTHWEMYAIGGSHAPTIISEGNRFIAPPNRFAKEVTKREYTQESEWKNWQWRSINDVFMDGAFFVQSGPEVIRTPSVSQDDMISARPGTMVNVLTVDAGFLNCVVGSPC 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01034 426 Pfam Pectate lyase 170 341 IPR002022 -
Bva11g01034 426 PANTHER PECTATE LYASE 34 170 - -
Bva11g01034 426 PANTHER PECTATE LYASE 171 426 - -
Bva11g01034 426 PANTHER PECTATE LYASE 18-RELATED 34 170 IPR045032 GO:0030570
Bva11g01034 426 PANTHER PECTATE LYASE 18-RELATED 171 426 IPR045032 GO:0030570
Bva11g01034 426 SMART amb_all 147 347 IPR002022 -
Bva11g01034 426 Gene3D - 102 419 IPR012334 -
Bva11g01034 426 SUPERFAMILY Pectin lyase-like 103 417 IPR011050 -
Bva11g01034 426 Pfam Pectate lyase, N terminus 41 88 IPR007524 GO:0030570
Bva11g01034 426 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Bva11g01034 426 PRINTS Pollen allergen Amb family signature 125 142 IPR018082 -
Bva11g01034 426 PRINTS Pollen allergen Amb family signature 397 420 IPR018082 -
Bva11g01034 426 PRINTS Pollen allergen Amb family signature 149 174 IPR018082 -
Bva11g01034 426 PRINTS Pollen allergen Amb family signature 366 390 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01034 Bva-Chr11 11929518 11932467 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01034 9 426 Polysaccharide Lyase AT1G14420 52.609 1.60e-160 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01034 K01728 - gmx:100796307 521.161