Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01033 ATGGAAACTCAAGAATATTGGGATCAGCACAACAAATCAGCTGATGTATATTGGAAACAGAGAGCAAAGAAGGCTGATAGGGCCAACGCAAAAGCTGCCTTTGCTGACCCTTATGAAATCTCTGCCGACCTCACCTCTAATGTTCACGAGATCCTAGTTGGTAACAAGACAAGGGCAGAAAGGATTTTGACCGGGAAGAACGTTAAAGGTCCATGCGACGCGTTCAACCCCATTGACAGAGGTGGAAACGGTGGAAAAATCTATGTTGTAATAGATCCCTCAGACGATGATATGATGAATCCCAAACCCGGCACCCTTCGTCACGCAGTTATACAAACCGAGCCACTGTGGATCATCTTCGCCAAAAGCATGGTGATCAGGCTGAGAGAGGAGCTGATCATGACTTCTTACAAAGCCATCGACGGCAGAGGTGCCAAAATTCACATTGCCGGCGGCGCCGGCATTACCATACAGTTCATTCACAACGTGATCATTCATGGGATTCATATCCATGATATGTATCCTGGGAATGGTGGCATTATTAGAGATTCCGttgaccattttggtcttagGACAAGAAGTGATGGTGATGCCATTTCCATTTTTGGCTCCAATCGTGTTTGGATTGACCATTGCTCTTTGTACAGAGCCACCGATGGATTGGTTGATTCAATTATGGGATCTACCGCTATTACCATTTCCAATAACCATTTTTCAAAGCACAATGAGATGTATGTCATTGGTGGTAGCGAGAATCCTACCATCATCAGTGAGGGTAACAGATACATTGCCCCTGATGATCTAAATGCAAAAAGGCTACAATG 824 0.4393 METQEYWDQHNKSADVYWKQRAKKADRANAKAAFADPYEISADLTSNVHEILVGNKTRAERILTGKNVKGPCDAFNPIDRGGNGGKIYVVIDPSDDDMMNPKPGTLRHAVIQTEPLWIIFAKSMVIRLREELIMTSYKAIDGRGAKIHIAGGAGITIQFIHNVIIHGIHIHDMYPGNGGIIRDSVDHFGLRTRSDGDAISIFGSNRVWIDHCSLYRATDGLVDSIMGSTAITISNNHFSKHNEMYVIGGSENPTIISEGNRYIAPDDLNAKRLQ 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01033 274 Pfam Pectate lyase 159 260 IPR002022 -
Bva11g01033 274 PANTHER PECTATE LYASE 243 273 - -
Bva11g01033 274 PRINTS Pollen allergen Amb family signature 195 216 IPR018082 -
Bva11g01033 274 PRINTS Pollen allergen Amb family signature 95 120 IPR018082 -
Bva11g01033 274 PRINTS Pollen allergen Amb family signature 71 88 IPR018082 -
Bva11g01033 274 PRINTS Pollen allergen Amb family signature 131 147 IPR018082 -
Bva11g01033 274 SUPERFAMILY Pectin lyase-like 74 258 IPR011050 -
Bva11g01033 274 Gene3D - 78 264 IPR012334 -
Bva11g01033 274 PANTHER PECTATE LYASE 18-RELATED 81 243 IPR045032 GO:0030570
Bva11g01033 274 PANTHER PECTATE LYASE 81 243 - -
Bva11g01033 274 SMART amb_all 123 268 IPR002022 -
Bva11g01033 274 Pfam Pectate lyase, N terminus 15 58 IPR007524 GO:0030570
Bva11g01033 274 PANTHER PECTATE LYASE 18-RELATED 243 273 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01033 Bva-Chr11 11925391 11927412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01033 15 265 Polysaccharide Lyase AT5G15110 41.274 1.16e-85 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01033 K01728 - gmx:100798579 279.641