Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01032 ATGCCAAAAGTTATCATCGTCTTGCCTGCGTTCTTATTCTTGTCTTGTTTGGTTGCCACCCTGCATGGCAATGAATTGGAAACTGAGGAATTCTGGAAAATAGAATCCAAATCATTTGATTCTTATTGGCAGCAAAGAGCAAAGGAGGCTGAAGAGAGCAACACAAAAGCTGCTGTTGCTGATCCCTTTGAAGTCACTGCTAACCTCTCCACTAATATTAACCAGGTACTTAGCCAAAGTGAAAACAAGACCACGAACGGTAGGATGTTGTTGAGAGGGCATAAAGATAAGAACGGTCCATGTGAGGCCTACAACCCCATTGACAAATGTTGGAGGTGTGATCCCAACTGGGAACAAAACCGGCAAAGGCTCGCAGATTGTGCCCAGGGCTTTGGCAGGAAAACCACCGGTGGAAAGGGTGGAAAAATCTATGTAGTGACAGATTCTTCCGACAATGATATGCTGAATCCCAAACCCGGCACACTTCGTCACGCAGTTATACAAAATGAGCCATTGTGGATCATCTTTGCTCGCAGCATGGTCATTTATCTGAAGCAGGAGCTTATAATGAACTCTCACAAAACCATTGATGGTAGAGGAGCCAATGTTCACATTGCTGGGGGTGCTGGTATCACCATCCAGTACATAAAGAATGTGATCATCCATGGGATTCATCTTCATGACATTGTGCCTAAAGAGGGTGGAATGATTAGAGATTCTGTTAATCATTTTGGTCTTAGGACAAGGAGTGATGGTGATGCAATTTCCATTTTTGGCTCTAACAATGTTTGGATTGACCATTGCTCATTGTCTAAAGCCACAGATGGACTAATTGATTCAATCATGGGATCCACTGCCATTACCATCTCCAACAACCAATTTGCAAAGCATGATGagGTGATGTTATTTGGTGCTAATGACAACCATGATGTAGATGCAAAAATGCAGATCACAGTGGCATTCAATAACTTTGGTAAGGGATTAATCCAAAGGATGCCAAGGTGTAGATGGGGTTTCTTTCATGTGGTTAACAATTACTACACTCATTGGCTTAAGTACGCCATTGGTGGTAGCATGCATCCTACTATCATTAGTGAGGGTAACAAATTCATTGCCCCAGACGACAGATTTCTTAAAGAGGTTACTATGAGAGTCCTTACGCCGAAGAGCGAGTGGGAAAAATGGCAATGGAGATCAATTGGTGATGAATTCCTCAATGGTGCATTCTTCGTGCAGTCTGGGCCAGAGATAGTGAAGGAAAAATCACAATACGCTCAGGATATGATCATGGCCAATCCTGTGAAATTTGTGGATCAACTCACTCAACATGCGGGCACACTTTCATGCAAAGTTGGTAAACCTTGTTA 1367 0.4287 MPKVIIVLPAFLFLSCLVATLHGNELETEEFWKIESKSFDSYWQQRAKEAEESNTKAAVADPFEVTANLSTNINQVLSQSENKTTNGRMLLRGHKDKNGPCEAYNPIDKCWRCDPNWEQNRQRLADCAQGFGRKTTGGKGGKIYVVTDSSDNDMLNPKPGTLRHAVIQNEPLWIIFARSMVIYLKQELIMNSHKTIDGRGANVHIAGGAGITIQYIKNVIIHGIHLHDIVPKEGGMIRDSVNHFGLRTRSDGDAISIFGSNNVWIDHCSLSKATDGLIDSIMGSTAITISNNQFAKHDEVMLFGANDNHDVDAKMQITVAFNNFGKGLIQRMPRCRWGFFHVVNNYYTHWLKYAIGGSMHPTIISEGNKFIAPDDRFLKEVTMRVLTPKSEWEKWQWRSIGDEFLNGAFFVQSGPEIVKEKSQYAQDMIMANPVKFVDQLTQHAGTLSCKVGKPC 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01032 455 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Bva11g01032 455 PRINTS Pollen allergen Amb family signature 395 419 IPR018082 -
Bva11g01032 455 PRINTS Pollen allergen Amb family signature 187 203 IPR018082 -
Bva11g01032 455 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Bva11g01032 455 PRINTS Pollen allergen Amb family signature 426 449 IPR018082 -
Bva11g01032 455 PRINTS Pollen allergen Amb family signature 251 272 IPR018082 -
Bva11g01032 455 PRINTS Pollen allergen Amb family signature 127 144 IPR018082 -
Bva11g01032 455 PRINTS Pollen allergen Amb family signature 353 372 IPR018082 -
Bva11g01032 455 PRINTS Pollen allergen Amb family signature 151 176 IPR018082 -
Bva11g01032 455 PANTHER PECTATE LYASE 35 455 - -
Bva11g01032 455 SMART amb_all 179 376 IPR002022 -
Bva11g01032 455 Pfam Pectate lyase, N terminus 38 84 IPR007524 GO:0030570
Bva11g01032 455 PANTHER PECTATE LYASE 18-RELATED 35 455 IPR045032 GO:0030570
Bva11g01032 455 Pfam Pectate lyase 186 370 IPR002022 -
Bva11g01032 455 Gene3D - 104 448 IPR012334 -
Bva11g01032 455 SUPERFAMILY Pectin lyase-like 96 449 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01032 Bva-Chr11 11918096 11923265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01032 39 455 Polysaccharide Lyase AT1G14420 56.573 4.47e-175 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01032 K01728 - gmx:100798579 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01032 11 11918096 11923265 Bva11g01032 11 11918096 11923265 ECH