Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01031 ATGCCAAAAGTTATCGTTAGTTTGCCTGCTTTCTTATTATGGTCTTGTTTGGTTGCCACCCTGCATGGCAATGAATTGGAAACTGAAGAATTCTGGAAAGTAGAATCCAAATCATTTGATTCTTATTGGCAGCAAAGAGCAAAGGAAGCTGAAGTGGCCAACTCAAAAGCTGCTGTAGCTGATCCCTTTGAAGTCACTGCTAACTTCTCCACTAATATTAACACGGTACTTAGCCAAAGTGAAAACAAGACCACGAACGGTAGGATGTTGTTGAGAGGGCATAAAGATAAGAACTGTCCATGTGAGGCCTACAACCCCATTGACAAATGTTGGAGGTGTGATCCCAACTGGGAACAAAACCGGCAAAGGCTCGCAGATTGTGCCCAGGGCTTTGGCAGGAAAACCACCGGTGGAAAGGGTGGAAAAATCTATGTAGTGACAGATTCTTCCGACAATGATATGCTGAATCCCAAACCCGGCACACTTCGTCACGCAGTTATACAAAATGAGCCATTGTGGATCGTCTTTGCTCGCAGCATGGTCATTTATCTGAAGCAGGAGCTTATAATGAACTCTCACAAAACCATTGACGGTAGAGGAGCCAATGTTCACATTGCTGGGGGTGCTGGTATCACCATCCAGTACATAAAGAATGTGATCATCCATGGGATTCATCTTCATGACATTGTGCCTAAAGAGGGTGGAATGATTAGAGATTCTGTTAATCATTTTGGTTTTAGGACAAGGAGTGATGGTGATGCAATTTCCATTTTTGGCTCTAACAATGTTTGGATTGACCATTGCTCATTGTCTAAAGCCACAGATGGACTAATTGATTCAATCATGGGATCCACTGCCATTACCATCTCCAACAACCAATTTGCAAAGCATGATGagGTGATGTTGTTTGGTGCTAATGATAACCATGACGTAGATGCAAAAATGCAGATCACAGTGGCATTCAATAACTTTGGTAAGGGATTAATCCAAAGGATGCCAAGGTGCAGATGGGGTTTCTTCCACGTGGTTAACAATTACTACACTCATTGGCTTAAGTACGCGATTGGTGGTAGCATGCATCCTACTATCATCAGTGAGGGTAACAAATTCATTGCCCCAGACGACAGATTTCTTAAAGAGGTGACTATGAGAGTCCTTACGCCGAAGAGCGAGTGGGAAAAATGGCAATGGAGATCAATTGGTGATGAATTCCTCAATGGTGCATTCTTCGTGCAGTCTGGGCCAGAGATAGTGAAGGAAAAATCACAATACGCTCAGGATATGATCATGGCCAATCCTGTGAAATTTGTGGATCAACTCACTCAACATGCGGGCACACTTTCATGCAAAGTTGGTCAGCCTTGTTA 1367 0.4323 MPKVIVSLPAFLLWSCLVATLHGNELETEEFWKVESKSFDSYWQQRAKEAEVANSKAAVADPFEVTANFSTNINTVLSQSENKTTNGRMLLRGHKDKNCPCEAYNPIDKCWRCDPNWEQNRQRLADCAQGFGRKTTGGKGGKIYVVTDSSDNDMLNPKPGTLRHAVIQNEPLWIVFARSMVIYLKQELIMNSHKTIDGRGANVHIAGGAGITIQYIKNVIIHGIHLHDIVPKEGGMIRDSVNHFGFRTRSDGDAISIFGSNNVWIDHCSLSKATDGLIDSIMGSTAITISNNQFAKHDEVMLFGANDNHDVDAKMQITVAFNNFGKGLIQRMPRCRWGFFHVVNNYYTHWLKYAIGGSMHPTIISEGNKFIAPDDRFLKEVTMRVLTPKSEWEKWQWRSIGDEFLNGAFFVQSGPEIVKEKSQYAQDMIMANPVKFVDQLTQHAGTLSCKVGQPC 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01031 455 PANTHER PECTATE LYASE 35 455 - -
Bva11g01031 455 Pfam Pectate lyase, N terminus 38 84 IPR007524 GO:0030570
Bva11g01031 455 Gene3D - 104 448 IPR012334 -
Bva11g01031 455 PANTHER PECTATE LYASE 18-RELATED 35 455 IPR045032 GO:0030570
Bva11g01031 455 SMART amb_all 179 376 IPR002022 -
Bva11g01031 455 PRINTS Pollen allergen Amb family signature 395 419 IPR018082 -
Bva11g01031 455 PRINTS Pollen allergen Amb family signature 187 203 IPR018082 -
Bva11g01031 455 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Bva11g01031 455 PRINTS Pollen allergen Amb family signature 151 176 IPR018082 -
Bva11g01031 455 PRINTS Pollen allergen Amb family signature 426 449 IPR018082 -
Bva11g01031 455 PRINTS Pollen allergen Amb family signature 251 272 IPR018082 -
Bva11g01031 455 PRINTS Pollen allergen Amb family signature 127 144 IPR018082 -
Bva11g01031 455 PRINTS Pollen allergen Amb family signature 353 372 IPR018082 -
Bva11g01031 455 Pfam Pectate lyase 186 370 IPR002022 -
Bva11g01031 455 SUPERFAMILY Pectin lyase-like 96 449 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01031 Bva-Chr11 11916025 11921128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01031 39 455 Polysaccharide Lyase AT1G14420 56.103 1.25e-173 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01031 K01728 - gmx:100798579 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01031 11 11916025 11921128 Bva11g01031 11 11916025 11921128 ECH
Bva11g01031 11 11916025 11921128 Bva05g00449 05 2214896 2216747 ECH
Bva11g01031 11 11916025 11921128 Bva03g01278 03 12483559 12485736 ECH
Bva11g01031 11 11916025 11921128 Bva04g01214 04 8350559 8353260 ECH