Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01029 ATGTGTTTCTTACGAGCTATAACCAAGCATGATTTCTCTCGAAATGTGCTCCTTCTGTCCTCAACATCGCGTGCTGACATCTCCCTGGAGACCAAGAAACTTGGGTTACTGgtttttcttaattcaaagaaaaaaattaactttatttccAGCATAGTTTGTTCATCAGTCAACGATGAATCCTTTTCAGTGCGGAAGCAAACCCATCTGGGCAATAGTCCTCCGGAGGAGCTATTCGGGCTGGATGTTGAACTTAAGCCAAGGAAAGCTAGCTCCGATACACTAGAACCAAGGTCCTGGTTTGGTCCAAGTGGACAATATATCAGAGAGCTACCTTGTCCTAGTTGCCGGGGAAGGGGTTATGGTCCTTGTACGGAGTGTGGAATCGAAAGATCAAGATCGGACTGTCCAAAGTGCAGAGGAAAGGGTATAGTGACTTGCCACCAATGCTTGGGAGATTGTGTTATATGGGAAGAATCAATTGATGAGCAACCATGGGAGAATGCCCGTTCTACTTCCCCTTTCAAAGTGAAGGAAGATGATGACGTTGACAATTTAGATATAAAGCTTGAtgtgaagaaaaaatcaaagcgTGTATACCAGTCAACTCCTCCCGAAGTTGGATTGAAGATTAGTCGCTCATTGAAAAGTCTCAATGTCAAAACTGGTCTATTTAGCAACCGAATGAAGATTATCCACAGCGATCCTTTGCTTCGTGCCCAGAGAATAGCTGCAATTAAGAAAGCGAGGGGAACTCCTGCAGCAAGAAAGCGTGCTTCTGAAACTATGAAAGCTTACTTCAGTGATCCAGAAAACCGTAGGAAAAGGAGCATTTCCATGAAGGGAGTTAAATTCTACTGCAGAAACTGTGGACGCGAAGGGCATAGGAAACGCTACTGTCCAGAACTTAAGGATAACTTAATCAGCAGGCAACTCACATGCCGGCATTGCGGCGAAAAGGGCCATAATAGAAGAACATGCAGACAGTTAAGATTTGGCAATCCCAACGGGAGAGTTATAAAGCATAGTCGTTGTAAAGTATGTCGTGAGTATGGCCATAATCGCAGGACATGCCCTCAAGTATCTGGTAATACAAAGAGGAGCCACTCAAGTTCTAAAAGACCCTACAAGTGCCGGTTGTGCGGCAAAGAGGGACACAATAGTAGGACATGCCCTGGTGGAGTTATTACAGGACATCCTTA 1202 0.4309 MCFLRAITKHDFSRNVLLLSSTSRADISLETKKLGLLVFLNSKKKINFISSIVCSSVNDESFSVRKQTHLGNSPPEELFGLDVELKPRKASSDTLEPRSWFGPSGQYIRELPCPSCRGRGYGPCTECGIERSRSDCPKCRGKGIVTCHQCLGDCVIWEESIDEQPWENARSTSPFKVKEDDDVDNLDIKLDVKKKSKRVYQSTPPEVGLKISRSLKSLNVKTGLFSNRMKIIHSDPLLRAQRIAAIKKARGTPAARKRASETMKAYFSDPENRRKRSISMKGVKFYCRNCGREGHRKRYCPELKDNLISRQLTCRHCGEKGHNRRTCRQLRFGNPNGRVIKHSRCKVCREYGHNRRTCPQVSGNTKRSHSSSKRPYKCRLCGKEGHNSRTCPGGVITGHP 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01029 400 ProSiteProfiles Zinc finger CCHC-type profile. 287 302 IPR001878 GO:0003676|GO:0008270
Bva11g01029 400 ProSiteProfiles Zinc finger CCHC-type profile. 377 392 IPR001878 GO:0003676|GO:0008270
Bva11g01029 400 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 32 393 - -
Bva11g01029 400 SUPERFAMILY Retrovirus zinc finger-like domains 338 394 IPR036875 GO:0003676|GO:0008270
Bva11g01029 400 SMART c2hcfinal6 344 360 IPR001878 GO:0003676|GO:0008270
Bva11g01029 400 SMART c2hcfinal6 286 302 IPR001878 GO:0003676|GO:0008270
Bva11g01029 400 SMART c2hcfinal6 313 329 IPR001878 GO:0003676|GO:0008270
Bva11g01029 400 SMART c2hcfinal6 377 393 IPR001878 GO:0003676|GO:0008270
Bva11g01029 400 ProSiteProfiles Zinc finger CCHC-type profile. 314 329 IPR001878 GO:0003676|GO:0008270
Bva11g01029 400 Gene3D - 340 396 - -
Bva11g01029 400 SUPERFAMILY Retrovirus zinc finger-like domains 284 330 IPR036875 GO:0003676|GO:0008270
Bva11g01029 400 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 32 393 - -
Bva11g01029 400 Gene3D - 282 330 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01029 29 397 C2H2 Transcription Factor Family AT5G20220 58.701 3.35e-153 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01029 - - gmx:100800156 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01029 11 11903999 11908329 Bva11g01029 11 11903999 11908329 ECH