Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g01008 ATGGCTGATCCTCAGAAGACGGGTGTCGGCGAGAGGGATATTGAGCAGGCCATTACATATCTTAAAAAGGGCGCATATCTACTAAAGTATGGGCGCAGAGGGAAGCCAAAGTTCTGCCCATTTAGGCTTTCCAATGACGAGTCTCTACTTATATGGTACTCTGGGAAGGACGAGAAACAGGTTAAGCTCAGTACTGTCTCAAAGATTATTCCTGGGCAGCGAACTTCAACATTTCAGCGGTACCCTCGGCCTGAAAAGGAATATCaatctttttctcttatatataatgataggTCCTTGGATTTGATATGTAAGGATAAGGATGAAGCAGAAATTTGGTTTGTCGGTCTTAAGGCATTAGTTACTCGAGGTAACACTCATAAGTGGAGACATGATGCAAGATCTGACATGTTTTCTGATTGTCCACAATCTCTCACTGGAAGAACTTCTCCATCGGTTTCACCATTTGATCCAGGAGATATTGAAGGAGTTTCTTTTGACACTTATTCACAAAACAGATTGGGAAGGGCTTTCtctgaaatattttcatttactgCAACTCACAAGGCTTCCAGTCAAACTGAATCAACTGCAAATTCATCTGTATCCTCTGGGTCTGTTGAAAGTTCAAATAATCGAAATTCTGCATCTGAGGCATTTCGAGTTAGTCTATCAAGTGCTGTAAGTTCATCCAGCCAGGGTTCTTACCGTGAAGATTTTGATGGCTTAggtgatatttttatttggggAGAAGGTGTTGGTGATGGAATTCTTGGTGGCGGTGTACATCGAGTTGGAACCTTATCTAGCTCTGTCATGGATGCATTTCTCCCCAGGGCATTGGAATCAAAAATAGTTCTAGATGTTCATAGTATTGCCTGTGGTTACAAACATGCTGTTCTAGTTACCAAGCAAGGAGAGATATTTAGTTGGGGAGAGGAGTCTGGAGGTAGGCTTGGCCATGGTGTAGAAACAGATGTTTCCCGCCCTAAGCTCATTGACACTCTTAGTGGTATGAATATTGAGTTAGTAGCATGTGGGGAATATCATACTTGTGCGGTTACATTTTCTGGGGATCTCTTTACGTGGGGTGATGGTACTCACAATTGTGGTTTACTTGGGCATGGAACTGAAGCCACTCATTGGATTCCTAAGAAGGTAAATGGTAACATAGAGGGAATACATGTATCATATGTATCTTGTGGACCTTGGCACACAGCTGTTGTGTCATCAGCTGGTCAGTTATTTACATTTGGGGATGGATCTTTTGGTGCATTAGGTCATGGAGATTATAGTAGCACAAATATTCCTCGAGAAGTAGATACTTTGATAGGGTTGAAAATAACCAAGGTTTCCTGTGGTGTTTGGCACACTGCTGCAGTTGTTGAAGTGATAAATGAATCTATGGAATCTTCTGTGGGCTCTCCTACTGGAAAACTGTTCACCTGGGGGGATGGAGACAAAGGCCGACTAGGGCATGGTGATAAGGAACCTAGACTAATTCCTGAATGCATAACTGCTTTggataatgaaaatatttgtcaaGTGGCTTGTGGCCACAATCTTACAATTGCTTTGACAACCTCAGGACATGTTTACACAATGGGAAGTACTGCTTATGGACAACTTGGCAATCCTGCAGCTGATGGAAATGTCCCTAAACGTGTTCAGGGTAAAATTACCAACAGTTTTGTAGAAGATATTGCCTGTGGTTCTTACCATGTTGCCGTCCTGACTTCCAAGACAGAGGTTTACACCTGGGGGAAGGGTTCAAATGGGCAGTTAGGTCATGGAGACATTGATCACAGAAATACACCAAcattggttaaaaatttaaaagataagcAAGTGAAGAGTCTTGCTTGTGGATCAAACTTTACTGCTGTTGTGTGCCTTCATAAATCGGTATCAGGTGCTGACCAATCTGTGTGCTCTGGTTGTCATAATCCTTTTGGATTCAGAAGAAAGCGCCACAATTGTTACAACTGTGGACTAGTTTTTTGCAACGCATGCAGCAGTAGAAAATCTACTAAAGCTTCCCTTGCTCCAAATACCAACAAGCCATATCGTGTTTGTGATGATTGTTATTCTAAACTTAATAAAGCTTCAGAATCCATTTCAATGGGGCAAACTCCTTCCTCAAAAAGTGGAAGTATAAATGACTTGAAGGCTACTAAATTACAGGCAACACTATCAAGGCTTTCATCTTTTGGTTCTATCTTTCAATCAGAAATCACACGGGCAAAGTCTTCAGAATCAAATGACAGCCACATTTTTCCGTCTTTGAATGGAAAATTACAGTTGGGCAGTTTCACTCCTTCAAAAGCATCAAATTCTCTTGCTGGATCCTCATCGAGGAAGCGCCTTTCATCTTCTGTTCCTTCTACTAGATTAGCTTCTCAAGCAACATCTCCAGTTTCGACAAAGTCAAGTCCATGGTCTTATGAAGATACACTGGATGAGTCTAAACAACGAAATGAGATCCTTAATCAAGAAGTTACAAGTTTAAGGGCACAGGTCAAAGATCTTACTCGAAAATCCAAAATACTTGAGGCTGAGCTCGAAAGGACAACAAAGCAATTGAAAGAAGTCACTGCAGTAGCTGCAGATGAAGCTGAAAAATGTAAATCTGCCAAAGAGGTGATAAAGTCATTGAGTACTCAGTTGAAGGAAATTGTGCAAAAACTGCCAGAAGGACATATTGCCTGCTCCAGTCCAGACTTCCACATTGGAACCAGGATGCAAAACCATTCTACAGATGAGAATCATATAACGAACATAATCACTCTTGAAGCTGGGTCAGACAGCAATGCAGCAAATCCTATGTTGCCTAATGGTGCCAAAACACCTAGTGGAAAATCAGAATGGATGGTGCAAGATGAACCTGGTGTGTACATAAGTTTGATTACCTTGCCAGGTGGCGATAATGAACTTAAACGTGTTCGCTTCAGTCGGAGACATTTCACAGAAGAACAAGCCGAGAAGTGGTGGGCTGAAAATGGAACCAAAGTATTGGAGCGGTACAATATAGTTCATTCCTA 3041 0.4055 MADPQKTGVGERDIEQAITYLKKGAYLLKYGRRGKPKFCPFRLSNDESLLIWYSGKDEKQVKLSTVSKIIPGQRTSTFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEIWFVGLKALVTRGNTHKWRHDARSDMFSDCPQSLTGRTSPSVSPFDPGDIEGVSFDTYSQNRLGRAFSEIFSFTATHKASSQTESTANSSVSSGSVESSNNRNSASEAFRVSLSSAVSSSSQGSYREDFDGLGDIFIWGEGVGDGILGGGVHRVGTLSSSVMDAFLPRALESKIVLDVHSIACGYKHAVLVTKQGEIFSWGEESGGRLGHGVETDVSRPKLIDTLSGMNIELVACGEYHTCAVTFSGDLFTWGDGTHNCGLLGHGTEATHWIPKKVNGNIEGIHVSYVSCGPWHTAVVSSAGQLFTFGDGSFGALGHGDYSSTNIPREVDTLIGLKITKVSCGVWHTAAVVEVINESMESSVGSPTGKLFTWGDGDKGRLGHGDKEPRLIPECITALDNENICQVACGHNLTIALTTSGHVYTMGSTAYGQLGNPAADGNVPKRVQGKITNSFVEDIACGSYHVAVLTSKTEVYTWGKGSNGQLGHGDIDHRNTPTLVKNLKDKQVKSLACGSNFTAVVCLHKSVSGADQSVCSGCHNPFGFRRKRHNCYNCGLVFCNACSSRKSTKASLAPNTNKPYRVCDDCYSKLNKASESISMGQTPSSKSGSINDLKATKLQATLSRLSSFGSIFQSEITRAKSSESNDSHIFPSLNGKLQLGSFTPSKASNSLAGSSSRKRLSSSVPSTRLASQATSPVSTKSSPWSYEDTLDESKQRNEILNQEVTSLRAQVKDLTRKSKILEAELERTTKQLKEVTAVAADEAEKCKSAKEVIKSLSTQLKEIVQKLPEGHIACSSPDFHIGTRMQNHSTDENHITNIITLEAGSDSNAANPMLPNGAKTPSGKSEWMVQDEPGVYISLITLPGGDNELKRVRFSRRHFTEEQAEKWWAENGTKVLERYNIVHS 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g01008 1013 Pfam FYVE zinc finger 639 700 IPR000306 GO:0046872
Bva11g01008 1013 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 244 305 IPR000408 -
Bva11g01008 1013 Gene3D - 470 646 IPR009091 -
Bva11g01008 1013 Pfam Regulator of chromosome condensation (RCC1) repeat 413 461 IPR000408 -
Bva11g01008 1013 Pfam Regulator of chromosome condensation (RCC1) repeat 478 526 IPR000408 -
Bva11g01008 1013 Pfam Regulator of chromosome condensation (RCC1) repeat 529 578 IPR000408 -
Bva11g01008 1013 Pfam Regulator of chromosome condensation (RCC1) repeat 583 630 IPR000408 -
Bva11g01008 1013 Pfam Regulator of chromosome condensation (RCC1) repeat 357 409 IPR000408 -
Bva11g01008 1013 Pfam Regulator of chromosome condensation (RCC1) repeat 306 354 IPR000408 -
Bva11g01008 1013 ProSiteProfiles BRX domain profile. 954 1009 IPR013591 -
Bva11g01008 1013 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 1007 - -
Bva11g01008 1013 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 478 529 IPR000408 -
Bva11g01008 1013 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 638 700 IPR017455 -
Bva11g01008 1013 MobiDBLite consensus disorder prediction 774 819 - -
Bva11g01008 1013 CDD FYVE_like_SF 644 696 - -
Bva11g01008 1013 Coils Coil 875 895 - -
Bva11g01008 1013 CDD PH_PLC_plant-like 12 122 - -
Bva11g01008 1013 Pfam Transcription factor regulating root and shoot growth via Pin3 953 1008 IPR013591 -
Bva11g01008 1013 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 1007 - -
Bva11g01008 1013 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 399 409 IPR000408 -
Bva11g01008 1013 Pfam Transcription factor BRX N-terminal domain 870 903 IPR027988 -
Bva11g01008 1013 Gene3D - 13 129 IPR011993 -
Bva11g01008 1013 Coils Coil 819 867 - -
Bva11g01008 1013 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 582 633 IPR000408 -
Bva11g01008 1013 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 306 357 IPR000408 -
Bva11g01008 1013 Gene3D - 183 463 IPR009091 -
Bva11g01008 1013 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 451 461 IPR000408 -
Bva11g01008 1013 SUPERFAMILY PH domain-like 13 121 - -
Bva11g01008 1013 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 358 412 IPR000408 -
Bva11g01008 1013 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 530 581 IPR000408 -
Bva11g01008 1013 SUPERFAMILY FYVE/PHD zinc finger 637 707 IPR011011 -
Bva11g01008 1013 PRINTS Chromosome condensation regulator RCC1 signature 308 324 IPR000408 -
Bva11g01008 1013 PRINTS Chromosome condensation regulator RCC1 signature 399 415 IPR000408 -
Bva11g01008 1013 PRINTS Chromosome condensation regulator RCC1 signature 358 374 IPR000408 -
Bva11g01008 1013 PRINTS Chromosome condensation regulator RCC1 signature 577 598 IPR000408 -
Bva11g01008 1013 PRINTS Chromosome condensation regulator RCC1 signature 415 429 IPR000408 -
Bva11g01008 1013 PRINTS Chromosome condensation regulator RCC1 signature 519 537 IPR000408 -
Bva11g01008 1013 SUPERFAMILY Tropomyosin 811 896 - -
Bva11g01008 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 647 707 IPR013083 -
Bva11g01008 1013 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 292 302 IPR000408 -
Bva11g01008 1013 Pfam Pleckstrin homology domain 15 121 IPR001849 -
Bva11g01008 1013 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 413 464 IPR000408 -
Bva11g01008 1013 SUPERFAMILY RCC1/BLIP-II 243 634 IPR009091 -
Bva11g01008 1013 MobiDBLite consensus disorder prediction 193 212 - -
Bva11g01008 1013 SMART fyve_4 632 701 IPR000306 GO:0046872
Bva11g01008 1013 MobiDBLite consensus disorder prediction 774 815 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g01008 Bva-Chr11 11764966 11772875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g01008 952 1010 Major Intrinsic Protein MIP AT1G31880 54.237 5.21e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g01008 - - lang:109355968 1356.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g01008 11 11764966 11772875 Bva11g01008 11 11764966 11772875 ECH