Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00972 ATGGGCAGGGTAAAGCTAAAGATAAAGAGGCTGGAGAACACAAATGGCCGTCAGGCAACTTATGCTAAAAGGAAGCAGGGAATCATGAAAAAGGCTTCTGAGTTATCTATACTGTGCGATATAGATATTATACTTCTCATGTTCTCACCAACCGGCAAGCCTTCACTATGCAGAGGGAGTCGCAGTAACATAGAGGAAATCATTGAAAAGTTTGCTCAGCTAACTCCACAGGAAAGGGCGAAAAGGAAGTTGGAGAGTCTTGAAGGActaaagaaaacatttaagaAGTTGGATCATGATGTAAATATACAAGAGTTTCTGGGTACAAGTAGTCAAACTATTGAGGACCTTAGCAATCGATCCAGAATATTACAGACTCAAATTTATGAAGTACACAAGAGACTGAGCCAATGGACTGAACCTGATAAAATTAACAGTGTGGAGCAATTGGGACAAATGGAGAACTCACTCAGGGAGTCACTTAATCAAGTTAGGTCACGTAAGGAAACTATACAAAAGCAGCAACTTGTGACATGGCAATGCAGTAATCAGTTCAATGAAATGCATGTTCCCTTCCAAATGAGCTCCGAGCAACATCTCCAACCTTTGTCGTGGATTCCCAACAGTGACAGCCATCATATGTTTTTACCTGAGGATTCAAATTTGCTCGTTCACAGAGATGTAGAGGGCTGTACAAACTCCTCTTTTGGGAGTTATGCTAGTTACCTTGGCACAAGTACAAAAACAGATATTTCAAATCCcgggaaagaaaatggagtcCTCAGTGATCTGAGCAGTACAACTCCCCTGACACCACAATTAGGAGGGCAGTTTCCATACCTGTCATACAATCTTAATTTACTTAACAGTACAAAGTTTCAACCAGCGGCAGAGATGAACCCACATGAAAATTCAGTAGATTATCATGTTAATGGCAGCTTTGAAGCCCCTAGACCTGGCTATGACACTAACCACAATGGATGGGCTTCCACATCGGGGCCTTGTGCTGTTACTATGTTTGATGAGCATTTGTATGCCCAGCAACCAAACTG 1052 0.4059 MGRVKLKIKRLENTNGRQATYAKRKQGIMKKASELSILCDIDIILLMFSPTGKPSLCRGSRSNIEEIIEKFAQLTPQERAKRKLESLEGLKKTFKKLDHDVNIQEFLGTSSQTIEDLSNRSRILQTQIYEVHKRLSQWTEPDKINSVEQLGQMENSLRESLNQVRSRKETIQKQQLVTWQCSNQFNEMHVPFQMSSEQHLQPLSWIPNSDSHHMFLPEDSNLLVHRDVEGCTNSSFGSYASYLGTSTKTDISNPGKENGVLSDLSSTTPLTPQLGGQFPYLSYNLNLLNSTKFQPAAEMNPHENSVDYHVNGSFEAPRPGYDTNHNGWASTSGPCAVTMFDEHLYAQQPN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00972 350 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bva11g00972 350 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Bva11g00972 350 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 349 - -
Bva11g00972 350 Coils Coil 77 97 - -
Bva11g00972 350 Coils Coil 154 174 - -
Bva11g00972 350 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 349 - -
Bva11g00972 350 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bva11g00972 350 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva11g00972 350 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Bva11g00972 350 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva11g00972 350 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva11g00972 350 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva11g00972 350 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00972 Bva-Chr11 11604688 11609575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00972 1 350 Type I MADS-box Gene Family AT2G03060 49.231 2.09e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva11g00972 SRF-TF 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g00972 - - lang:109356063 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g00972 11 11604688 11609575 Bva11g00972 11 11604688 11609575 ECH