Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00966 ATGCTCATAGCAGAAATGATAGAAGAGACAAAACAGCTGCTAGAAATGGCCGAAGAGCGTCTTCAACAGCTGAGATCTAAAGCAACAGAGCTTCTCTTGAGAGAAGAATGGAAAGAAGCCATAGGCGCCTATTCCCAGTTCATCACACTCTCCAAAGACCAAATCTTTCAGACAAATCAGCAGCAATTATCAGACCCAGATCAGCTTCAAAAGCTCAGGAAATCTCTCTGCCTAGCACTTTCTAACAGAGCTGAAGCGAGGTCGAGATTGCGAGAATTTCATGGCGCATTGGAAGATTGTGACCAAGCTTTGGAAATCGACGGCACCCATTTCAAGACTCTCCTCTGCAAAGGTAAGATTTTGCTCAGTCTTAACCGGTATTCTATGGCTCTCGACTTTTTCAGAGCTGCTCTGCTTCATCCTCAGGCTAGTGGAAGCTCTGAAAGCCTCAACGGGTATGTGGAGAAATCCAAAAAGATGGACCTTTTAGCTAGAACAGGAGCTCTCGATCTATCAGATTGGGTTGCAAATGGGTTTCGTGGAAAGTCGCCGGAACTTGCAGAGTACGTTGGTGTAGTGGAGATTAAGAAATCTGAGATTAGTGGCCGTGGCTTGTTTGCTGCTAAGAACATTGATGCAGGAAGCTTGGTTTTGGTCACTAAGGCCATAGCCCTGGAGAGGAGTATATTGGCAGGCAAAGATTTATGTGAGGACGCTCAGTTGGTGATGTGGAAGAATTTCATTGATAAAGTTGCAGACGTTGTGAGAAAATGTCTGAGAACTCGAAATCTGATTAGCAAATTGTCAAGTGGAGAAGATGAACATGAACTCGAGGTGGTTGATATAAGTCTCTTCAGGCCAGAGACAGAGTTTCAGGTGCATTCAAGTGACAAGATGGAAATGGATCAAATGTTGGCTATATTGGATGTCAATTCTTTAACTGAGGATTCAGTTTCATCCAATGTATTGGGGAGGAACAAGGATTATTATGCTGTGGGGCTATGGTTGCTGCCTGCCTTAATCAACCATTCGTGTTGCCCCAACGCTAGGCGCTTGCACGTTGGGGACTATTTAATAGTCCATGCTTCTAAAGACATCAAGGCTGGTGAAGAGATTACCTTTGCCTATTTCGATCCACTTTTGCCATTGTACAAGCGAAAGGAGACGTCAATGACATTGGGCATTCATTGCAGATGCAAGAGATGCAAGTTTGAGGCAGAAATCTCCTCCAAACAAGAggtaaaagaaattgagattGGTCTTGAAAGAGGGATGGATGTGGGTGGTGCAGTTTACAagttagaagaagaaatgaagagaTGGAAAGTGAGGGGAAAAGAGAGAGGCTATCTGAGAGCATCATTGTGGTGTGCATATTCTGAGACTTACAGGTCAGATAGGTCTATGAAGAGATGGGGAAGGCGGATTCCGGCACCGGATGAGGTGGTTGATAGCATCATAAATGTAGTGGGAGGTGATGAGAGGTTGCTGAAGATCCTAATGGAACAACTGAAGAAAAATGGGGCAGGCCTTATGGAAATGGAGAAAGCTATGAAGTTGGCAAGAGAAGTATATGGAAAGGTGGTAAAAAAGCAAGCAATGAGGACACTTCTTGAGCTTTGCATTGGAGCTAACGAGTG 1640 0.4354 MLIAEMIEETKQLLEMAEERLQQLRSKATELLLREEWKEAIGAYSQFITLSKDQIFQTNQQQLSDPDQLQKLRKSLCLALSNRAEARSRLREFHGALEDCDQALEIDGTHFKTLLCKGKILLSLNRYSMALDFFRAALLHPQASGSSESLNGYVEKSKKMDLLARTGALDLSDWVANGFRGKSPELAEYVGVVEIKKSEISGRGLFAAKNIDAGSLVLVTKAIALERSILAGKDLCEDAQLVMWKNFIDKVADVVRKCLRTRNLISKLSSGEDEHELEVVDISLFRPETEFQVHSSDKMEMDQMLAILDVNSLTEDSVSSNVLGRNKDYYAVGLWLLPALINHSCCPNARRLHVGDYLIVHASKDIKAGEEITFAYFDPLLPLYKRKETSMTLGIHCRCKRCKFEAEISSKQEVKEIEIGLERGMDVGGAVYKLEEEMKRWKVRGKERGYLRASLWCAYSETYRSDRSMKRWGRRIPAPDEVVDSIINVVGGDERLLKILMEQLKKNGAGLMEMEKAMKLAREVYGKVVKKQAMRTLLELCIGANE 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00966 546 ProSiteProfiles SET domain profile. 191 377 IPR001214 GO:0005515
Bva11g00966 546 SMART set_7 193 383 IPR001214 GO:0005515
Bva11g00966 546 SUPERFAMILY SET domain 193 403 IPR046341 -
Bva11g00966 546 Gene3D Tetratricopeptide repeat domain 15 161 IPR011990 GO:0005515
Bva11g00966 546 Coils Coil 4 34 - -
Bva11g00966 546 Gene3D SET domain 286 407 IPR046341 -
Bva11g00966 546 SUPERFAMILY TPR-like 11 139 IPR011990 GO:0005515
Bva11g00966 546 CDD SET_SMYD 305 402 - -
Bva11g00966 546 Pfam SET domain 202 376 IPR001214 GO:0005515
Bva11g00966 546 SMART tpr_5 77 110 IPR019734 GO:0005515
Bva11g00966 546 SMART tpr_5 111 144 IPR019734 GO:0005515
Bva11g00966 546 SMART tpr_5 21 54 IPR019734 GO:0005515
Bva11g00966 546 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 15 533 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Bva11g00966 SET 2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g00966 - - mtr:MTR_4g082140 739.184