LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva11g00957	ATGGATAGGTCAAGGTCACAATGCTTTGAGAAAGTGGGGTTGAAGAAAGGGCCATGGATTCCAGAGGAAGACCAGAAACTCATGGCTTTCATTGAAGAACATGACCATGGAACCTGGCATTCATTGCCTGGTAAAGCTGGGCTTCGAAGATGTGGGAAGAGTTTCAAACTGAGATGGATCAATTATCTTAGACCTGACATAAAAAGAGGCAAGTTCAGCTTGGAGGAAGAGCACACCATTGTTCGACTCCAAGCTTTTCTTGGAAACAAATGGTCAACTATAGCAGCCCACTTACCTCAGAGGACTGACTATGAGATCAAGAACTACTGGCACAACCACCTCAAGAAGAGACTAACCAAAGTAGGCATAGATCCCATCACCCACAGGCCCAAGACCAACGGCTTCGGCTACTCCAAGGATGTCTCCAATCTGAGCCACATGGCTCAGTGGGAGAGTGCTCGGCTGGAAGCCGAAGCCAGACTTGTCCAAGATTCTAGGTTGGAGAACCAGCTCAGCTCTAGCTTCTCCAAGCCAGCTCGGTTCATCCTCAACAAAATCTCACTTCCTCAACCTTCAGTTCCACCACCGTGCCTAGATGTTCTCACAGCATGGCAACGTTCATGGACTTCCAGTTCGCAATCAAATAAAGATCACACCACAGTGCATGACATGTACGCTACGATGCTCACCGCCGATGGCCTCGAGTCGCCGGCGTTCCCGGAAAGCATGCCACTTTCTATCTCAACCACCGTCGAGACACTCAACAATAACAAGGATGTCTCCAATCTGAGCCACATGGCTCAGTGGGAGAGTGCTCGGCTGGAAGCCGAAGCCAGACTCGTCCAAGATCCTAGGTTGGAGAACCAGCTCGACTCCAGCTTTCCTCAACCTTCAGTTCCACCACCGTGCCCAGATGTTCTCACAGCATGGCAACGTTCATGGACGTCCAGTTCGCAATCAAATAAAGATCACACCACAGTGCATGACATGTACGGCATGATGCTCACCGCCGATGGCCTCGAGTCGCCAGCGTTCCCGGAAAGCATGCCACTTCCTATCTCAACCACCGTTGAGACACTCAACAATAACTTTCTTCCCTCCACAACCACTGCCTCATGCGAGGGTAATGGCAATTGTGTTAATTTGATAGAAACCAGTGGCGATAATGAGTCATGGAAATATTTGCCCAAAGAAGTGTATGATGGAGCGTTGGACTTGCAAGATGATAACATCATGGTGGCTGTGGAAGCATTCATGAGAGCATCAGCAGGATATAAATGTCATTTGTA	1289	0.4911	MDRSRSQCFEKVGLKKGPWIPEEDQKLMAFIEEHDHGTWHSLPGKAGLRRCGKSFKLRWINYLRPDIKRGKFSLEEEHTIVRLQAFLGNKWSTIAAHLPQRTDYEIKNYWHNHLKKRLTKVGIDPITHRPKTNGFGYSKDVSNLSHMAQWESARLEAEARLVQDSRLENQLSSSFSKPARFILNKISLPQPSVPPPCLDVLTAWQRSWTSSSQSNKDHTTVHDMYATMLTADGLESPAFPESMPLSISTTVETLNNNKDVSNLSHMAQWESARLEAEARLVQDPRLENQLDSSFPQPSVPPPCPDVLTAWQRSWTSSSQSNKDHTTVHDMYGMMLTADGLESPAFPESMPLPISTTVETLNNNFLPSTTTASCEGNGNCVNLIETSGDNESWKYLPKEVYDGALDLQDDNIMVAVEAFMRASAGYKCHL	429

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bva11g00957	429	Pfam	Myb-like DNA-binding domain	16	63	IPR001005	-
Bva11g00957	429	Pfam	Myb-like DNA-binding domain	69	114	IPR001005	-
Bva11g00957	429	SUPERFAMILY	Homeodomain-like	13	110	IPR009057	-
Bva11g00957	429	SMART	sant	15	65	IPR001005	-
Bva11g00957	429	SMART	sant	68	116	IPR001005	-
Bva11g00957	429	Gene3D	-	15	68	-	-
Bva11g00957	429	Gene3D	-	71	133	-	-
Bva11g00957	429	PANTHER	MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN	257	422	-	-
Bva11g00957	429	ProSiteProfiles	Myb-like domain profile.	11	63	IPR001005	-
Bva11g00957	429	CDD	SANT	71	114	IPR001005	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva11g00957	Bva-Chr11	11528095	11529659	Dispersed/Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva11g00957	4	167	MYB Transcription Factor Family	AT5G15310	69.048	8.39e-82	250

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Bva11g00957		Myb_DNA-binding	6.3e-07	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva11g00957	K09422		-	gmx:100799222	328.946

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