Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00944 ATGACTAGAGCTAAAACGAAGGTGGAAATCATAAGAAATGAGGCTATTAGAAAAGCCACGTTCAAGAATAGGAAGGAGAGTTTGACAAAGAAGATAAGTGAAATGAACATTTTATGCGGTGTTGGAGCTTGTGCTATCATGTTCAATCCTAACGATCCTCAGCCGGAGCTTTGGCCGTCGCCGGAAGGGGTGGAAATCGTGATCAATAGGTTTAGGGACATACCTGAATGGgcacaaagagaaagaatgatGAACCAGGAGAGCTACGCGAAGAAGCTGATAGGGAAATGGGAAAGGCTAGTAAGGAAACAGAAAGAAGACAACCATGAGAAGGAGATGACTCGCATTATGTTTCAGTATCTTGATGGAACAACTACAAAGCTTCCTATGGACACTGATTTCAATTGTTTGGAAAAGATGATTGATCAGAAATTGGAGAGTATCACTAAGACTTTCCAAGCACCACCTCAGGTTGAAGATGGTAATATTCACAAGTG 497 0.4024 MTRAKTKVEIIRNEAIRKATFKNRKESLTKKISEMNILCGVGACAIMFNPNDPQPELWPSPEGVEIVINRFRDIPEWAQRERMMNQESYAKKLIGKWERLVRKQKEDNHEKEMTRIMFQYLDGTTTKLPMDTDFNCLEKMIDQKLESITKTFQAPPQVEDGNIHK 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00944 165 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Bva11g00944 165 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Bva11g00944 165 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Bva11g00944 165 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 154 - -
Bva11g00944 165 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Bva11g00944 165 PANTHER MADS BOX PROTEIN 2 154 - -
Bva11g00944 165 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva11g00944 165 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00944 Bva-Chr11 11467539 11468036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00944 1 150 Type I MADS-box Gene Family AT5G48670 43.709 4.14e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva11g00944 SRF-TF 4.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g00944 - - gmx:100813231 155.221