Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00900 ATGGCGGCGATGCAAGGCGTGCAGAAGAACACCCTTTACGTGGGTGGATTAGCGGAGGAGGTCAACGAGTCAATCCTTCACGCGGCCTTCATACCATTTGGGGACATCAAGGATGTAAAGACGCCTCTGGACCAAGCGACCCAGAAGCACCGTTCTTTCGGCTTCGTCACCTTCTTAGAGAGGGAGGACGCCGCCGCCGCCATGGACAACATGGATGGTGCTGAGCTTTATGGGCGTGTGCTCACCGTCAATTATGCCCTGCCAGAGAAAATTAAGGGTGGTGAACAGGGTTGGGCTGCTCAGCCAATTTGGGCGGATGCTGATACTTGGTTTGAGCGGCAGCAGCAAGAAGAGGAGATGCGTAGAATTGAGGCAGAGAATCAAGCTGCAATGAGGGCTGCAGAAGATTTGCGCAGAAAAAAATTGGCCCAAGAGCGAGAGGGAGAAAAGGAGGAGGAAATTGACATCAAGGATGATCCCATGGCAAAGGCCGAAGCAGAGGCTCTGAAAGAGAACAAGCAATG 524 0.5305 MAAMQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDAAAAMDNMDGAELYGRVLTVNYALPEKIKGGEQGWAAQPIWADADTWFERQQQEEEMRRIEAENQAAMRAAEDLRRKKLAQEREGEKEEEIDIKDDPMAKAEAEALKENKQ 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00900 174 MobiDBLite consensus disorder prediction 136 174 - -
Bva11g00900 174 Gene3D - 2 151 IPR012677 -
Bva11g00900 174 PANTHER TRANSFORMER-2-RELATED 5 172 - -
Bva11g00900 174 CDD RRM_PPIE 12 84 IPR034168 GO:0003723
Bva11g00900 174 SMART rrm1_1 11 84 IPR000504 GO:0003723
Bva11g00900 174 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E 5 172 - -
Bva11g00900 174 Coils Coil 113 154 - -
Bva11g00900 174 SUPERFAMILY RNA-binding domain, RBD 7 97 IPR035979 GO:0003676
Bva11g00900 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Bva11g00900 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00900 Bva-Chr11 11252024 11253881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00900 10 88 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 2.90e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g00900 - K09564 gmx:100809447 278.1