Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00894 ATGGAATCTTGGAGTTACACCCCCGAAGAGAAAAGCTATTTGTTTTCTGAGGAAATGGACTTTTCATTTGATGCTTTTATGAGAACAAGAAAAGCACTGGTTGAATGGGACAACAAGGCCTCCTGTAACTTTGAGAAGGATGAATTTATTTCAGATAGAGAAGTAGTTAAAAGCATGGAATTCGTGGACTTGGGATTTCCTGATCTGTTCCGAAAATCTTTTCATGGTAGCCAGCCACTGGAAACTTCTAGCTGTGACTTAGATAGTAATTCTAGTAAAAGAGTGAATTCCTCTACTCATGTTGTTGCTCTGGATTCACCCTTGGGGGAAGAGGAACCTGAGTCAAAGCATTCCAGTCCTCTAGTTGAATCTAAAAGTCATGATTCATCACTTATTGATTTGAAGTTGGGGAGATTAGCAGATTGTAAAGATGCAAGTAGTAATGAAATTGCAAAAGAAGGACTAGCTTTGTCCTCTATACCTCCAAGGGCACTTGCAAAGAGGGCTCGCACTTCTAGCTCACCTACTCAAAAACCTGTCTGTCAAGTTTATGGTTGCAATATGGATCTTAGCTCCTCAAAAGAGTACCACAAAAGGCATAGAGTTTGTGATGTTCACTCCAAGACAGCCAAAGTTATTGTTAATGGCATTGAACAAAGATTTTGTCAGCAGTGTAGCAGGTTCCATTTGCTAGCTGAGTTCGATGATGTCAAGCGTAGTTGTCGCAGACGTCTACAAGGACATAACGAACGTAGAAGGAAACCTCAGTTTGATTACATCTCTGGTAAATCACACAAGTTGCTTCAATCATATCAAGGTGCCAAATATCTGGGGGCTTCATTGCAGAAGAAACCCCAGTTTGCCTTTCAAGATATATTTCGAAGTGGCATCTTTTACCCAGAGAAGTATGGACAAACCAACCACAGTGAACATATCAAAGTGGAAGAAGAACCATTTTACAGCCCTCAACTAGCAGTATCAATCACATACGGTCAAGAGTTATCCAACTCCAGCTGTGCTCTCTCTCTTCTGTCAGCTCAGGCACAAGATCTGTCGCGCCCCTTGGTAGGAAATCCAATGGCTACTTCGCTAACTTTTCAGGGCATGTGCTCTGGCCGCAGTGATAGCCAAGTTTCTGAAACACCTTTGGCAATAAGATCCATGGATAAATATGTACAAAATGAGTCCTATTCATGTGGGGCAAACTCTATGGATGTTAAGAATGGAGTTGGAGTGCTTTCTGAGGCTGATCATTCTCAAGTCCAAGTCCATAGAGATGATATTTCTCAATCATCATACTCATCAAATGACAAAAATCACTTTACCCCTGAACATGGAACCACTGTTGATTTGTTCCAATTGTCCTCACATCTTCAAAGGGTGGAGCAACAAAGAAATTCTTTCCCAGTAAAGCGGCAAAACGAGGACTGCTGTTTCCCAATTGTGTA 1448 0.4144 MESWSYTPEEKSYLFSEEMDFSFDAFMRTRKALVEWDNKASCNFEKDEFISDREVVKSMEFVDLGFPDLFRKSFHGSQPLETSSCDLDSNSSKRVNSSTHVVALDSPLGEEEPESKHSSPLVESKSHDSSLIDLKLGRLADCKDASSNEIAKEGLALSSIPPRALAKRARTSSSPTQKPVCQVYGCNMDLSSSKEYHKRHRVCDVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDVKRSCRRRLQGHNERRRKPQFDYISGKSHKLLQSYQGAKYLGASLQKKPQFAFQDIFRSGIFYPEKYGQTNHSEHIKVEEEPFYSPQLAVSITYGQELSNSSCALSLLSAQAQDLSRPLVGNPMATSLTFQGMCSGRSDSQVSETPLAIRSMDKYVQNESYSCGANSMDVKNGVGVLSEADHSQVQVHRDDISQSSYSSNDKNHFTPEHGTTVDLFQLSSHLQRVEQQRNSFPVKRQNEDCCFPIV 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00894 482 MobiDBLite consensus disorder prediction 107 126 - -
Bva11g00894 482 SUPERFAMILY SBT domain 179 260 IPR036893 GO:0003677|GO:0005634
Bva11g00894 482 MobiDBLite consensus disorder prediction 81 126 - -
Bva11g00894 482 ProSiteProfiles Zinc finger SBP-type profile. 178 255 IPR004333 GO:0003677
Bva11g00894 482 Gene3D - 171 242 IPR036893 GO:0003677|GO:0005634
Bva11g00894 482 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 44 463 IPR044817 GO:0003677
Bva11g00894 482 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 44 463 - -
Bva11g00894 482 Pfam SBP domain 181 254 IPR004333 GO:0003677
Bva11g00894 482 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00894 Bva-Chr11 11222467 11227579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00894 132 480 SBP-box Gene Family AT1G69170 38.056 2.40e-56 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva11g00894 SBP 7.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g00894 - - gmx:100797372 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g00894 11 11222467 11227579 Bva11g00894 11 11222467 11227579 ECH