Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00840 ATGTATGAAGAGGGTGGTGGTCTTGATCCCAATGCAATAATGGTACAAGGTACATCGCCTGCAGCGGGCTCGTCAGAAGATTGCTTCTCCCAAATGGTATCTGACCCATCACCGCCATCAGCTATCACTGTCATTGCTACAAACAGCTTTCCAGAGATTAATTCCGGGCTTTCTTTGGAAAACTTCGCATACCCTGCAGCCTGTGGAGAAGATGCTGCCACCCTCACAGGTAGAGTAGCTGTAGCCACTGCCATGGACATTGCCCATCAACACCATCTGCGTTTTAAGCAGGAAAAATTCTACAATGATAGCAACAACTTTAACACCAGTTTCCCACAAGAGCCAAATCATGATTCCAGTCAAGTCTTTTACTATGACAAGGCTAATTTGGATCTCCAAAATCATTATCAGGACCAACAATTTCTACAAATGGAGCTGCAAAACGGCACCCGAAGCTACCACGCTCACCCTACACCAGATCTCCTGAATCTCCTTCACTTACCCAGATGCTCCCCCTCTGCAAACTCATCAATCTCTTTTATGAACCCTGTACAGAAAGACACCATACTTCAAAATCCTTCCTTGGTTGGTGGGTACCAACAAATGGGGGTTGACAACACAAACTCGTCCTCTGCTTTTTATGATCCTTTCTTGCATTTGAACTTGCCTGGACAGCCTCCAGCTATCAGAGAATTGCTTCAGTCTCTTCCCCATGGCTATAGCTTGCCAACTTCAAGAAATGACCTAGTCTATGGTGCAGGAGGGGATGATAGAGAAGGCAGTGGAGGCGCATATCAAGATGGAGATCATGGGAGAGATTTCGAAAATGGGGTCCTGGAGTTTACCCAGGAACTAGTTTCTGTTGGTAAAAAGGAAGGTAAAAGGACCAAACAGTTTACTACTGAGAGGCAAAGAAGAGTGGATTTGGGAAGCAGATTTGAGGCTTTAAAAGAATTGATCCCACACCCCAAAAAGAACGATAGAGCATCTGTGGTTGCTGATGCTATTGACTATATCAAAGAGCTGATTAGAACAGTGAACGAGCTCAAATTAATAGTGGAGAAGAAAAGATGTCAAAAAGAAAGCATCAAGAGGCGCAAGGTTGAAGACGATGCTACAGGAGACTTGGAGAGCTGCAACTTGAAGCCACTTGGGGACCAAGACCACTCCTACAATAATGGATGTTTAAGAAGCTCATGGCTGAAGAGGAAATCCAAAGACACCGAGGTTGATGTTCGCATTGTTGATGATCAAGTGACCATCAAACTAgttcaaagaaagaagatcGATTGCTTGCTCTATGCTTCCAAGTTGCTAAATGAGCTTGAGCTGGAACCCCAACACGTTGCTGGTGGCCACATTGGCGATTTCTGCAGTTTCTTGTTCAATAGCGAGATTTGTGAAGGTTCTTCAGTGTATGCAAGTGCAATAGCCAACAAGCTTATTGAGGTAATGGACAGAAACTTTGCAGCAGCATG 1478 0.4425 MYEEGGGLDPNAIMVQGTSPAAGSSEDCFSQMVSDPSPPSAITVIATNSFPEINSGLSLENFAYPAACGEDAATLTGRVAVATAMDIAHQHHLRFKQEKFYNDSNNFNTSFPQEPNHDSSQVFYYDKANLDLQNHYQDQQFLQMELQNGTRSYHAHPTPDLLNLLHLPRCSPSANSSISFMNPVQKDTILQNPSLVGGYQQMGVDNTNSSSAFYDPFLHLNLPGQPPAIRELLQSLPHGYSLPTSRNDLVYGAGGDDREGSGGAYQDGDHGRDFENGVLEFTQELVSVGKKEGKRTKQFTTERQRRVDLGSRFEALKELIPHPKKNDRASVVADAIDYIKELIRTVNELKLIVEKKRCQKESIKRRKVEDDATGDLESCNLKPLGDQDHSYNNGCLRSSWLKRKSKDTEVDVRIVDDQVTIKLVQRKKIDCLLYASKLLNELELEPQHVAGGHIGDFCSFLFNSEICEGSSVYASAIANKLIEVMDRNFAAA 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00840 492 Coils Coil 339 359 - -
Bva11g00840 492 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 292 361 IPR036638 GO:0046983
Bva11g00840 492 PANTHER TRANSCRIPTION FACTOR BHLH91 77 491 - -
Bva11g00840 492 CDD bHLH_AtMYC1_like 299 370 IPR045896 -
Bva11g00840 492 Gene3D - 285 360 IPR036638 GO:0046983
Bva11g00840 492 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 293 342 IPR011598 GO:0046983
Bva11g00840 492 SMART finulus 299 348 IPR011598 GO:0046983
Bva11g00840 492 MobiDBLite consensus disorder prediction 251 271 - -
Bva11g00840 492 PANTHER TRANSCRIPTION FACTOR BHLH91 77 491 IPR045895 GO:0006355|GO:0048658
Bva11g00840 492 Pfam Helix-loop-helix DNA-binding domain 294 342 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00840 Bva-Chr11 10940452 10942899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00840 1 492 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G06170 39.521 3.29e-80 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva11g00840 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g00840 - - jre:108994595 438.728