Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00671 ATGGATTCTTCTGCCCTGGTGGAAAGTACAACTCTGGAGCCTCGAGATGAAATGGAATTTGAATCTCATGAAGCTGCGTATGCATATTACAAAGAATATGCCAAGTCTGTAGGGTTTGGTACTGCCAAGTTGAGCAGTCGGCGTTCCAGGGCATCGAAGGAATTCATTGATGCCAAATTTTCATGTATAAGATATGGCAATAAGCAGCAATCTGATGATGCTATTAATCCACGGCCTTCTCCGAAAATTGGTTGTAAAGCGAGCATGCATGTGAAGAGAAGACAAGATGGTAAGTGGTATATCTATAGCTTTGTAAAGGAGCATAATCATGAACTTTTGCCTGCTCAGGCTCATTTCTTTCGAAGTCACAGGAGTACTGATCCTCTAAATAATGATGTTCGAATGCGAAGAAGGAAGAATTTAACTGCagtttctaaattatttagtgCATATCAAAATGTTGATTGTTTAGAGAACTTTGTGAGGAATCAGCATGACAAAGGACGGAGTTTAGTTTTAGAAGCTGGCCATGCTCAATTGCttcttgaattatttatgCATATGCAGGATGAGAATCCAAAATTCTTCTATGCAGTTGATTTGAATGAAGAGCATCGACTTAGAAATGTGTTCTGGGTCGATGCCAAAAGCATGGAAGATTATGCTTACTTTGGTGATGTTGTTTCTTTTGACACAACTTATTTTACtagcaaatataaaataccCCTGGTACTTTTCACTGGAGCAAACCATCATGTTCAACCAACATTGTTTGGTTGTGCATTGATTGCTGACGATTCGATTTATACTTTTGCTTGGTTACTGCAAACATGGTTAGTAGCAATGGGGGAACGAGCTCCACAAGTTATTCTCACTGACCAAAATGAGTCAATTAAAGCAGCTGTTGCTGCAGTTCTTCCAGCCACCCGCCATTGTTTTTGTCTGTGGCATGTTTTGGAAAAGATACCTAGACAGCTTGTATTTTTAGGCTCATGGCATGCTAGTTTTATGGAAAAGTTCAACAAATGTATACATAGATCATGGACAGAGGGACAATTTGAAAAGAGATGGTGGAAATTGGTTGACAGGTTTAATCTGAGAGATGTTGAATGGgtccaatccttgtatgatgACCGTACACGCTGGATGCCAACTTTTATGaaagatatttcttttgctgGGTTGTCTACTGGTTCACGCTCAGAAAGCATGAATTCTTTCTTTGATAACTATATTCAAGGGGATACTTCATTGAGAGAATTTATAGAACGGTACAAAGTGATTCTTGAAGACAGGTATGAAGAGGAAGCTAAAGCAAATTTTGATGCATGGCATGAAACACCTGAATTGAAGTCTCCTTCtccttttgaaaaacaaatgttATTAGTCTACacacatgaaatttttaagaagTTCCAAGTAGAGGTTCTGGGTGCAGCAGCTTGCCatcttaagaaagaaaatgatgagatAATCACAACTTATACTGTGAAAGATTTCGAAGATGATCAAAGTTATATGGTACAATGGAACAAATCAAACTCAGATATATGTTGTTCATGCCATTCATTTGAATACAGAGGTTATCTCTGTAGACATGCTATTGTGGTTCTACAAATGTCTGGTGTTTTCAGCATCCCACCTAAGTATGTCTTGCAAAGGTGGACGAATGCTGCTATGAGCAGGCATCCCATTAGTGAAAGATTTGATGAAGTTCAATCAAAGGTCCGGCGTTTCAATGATTTATGTAGACGAGCCATAATATTGGGAGAAGAAGGATCTTTGTCCCAAGAGAGTTACCATATTGCATTAGCTACCATAAAAGAAGCTTTAAAGCAATGTGGAAACTTGAACAGCTCTGTTGAGAATGATGTGAGACATGAACCTTTAGCCATTCAAGCTGTTTGCAATGTTGAAGGAGAGCATCAATCTAATAATACATCTAACAAGTTTCCTGATCCAAGAGTGACTGCTGGTAATAAGGCTTCAAGGACTGGTTTGCTTGGTGTGGACGTGGGAAATGCTGAAAATaatgaaggaaagaaaggaatGGTACCTCAGCTGGAGGGAGTGAGTGGGCAAGATGGTTTTCACCAAATGGAACTAACCGATATGAGGCCACATAATGTCATGTCTATGCAGTTTCACAATGCCATGCCTTCTCTGTTCCATAACGTTACATCGGCACAGTTTCATGGCGCAGCTTCAACTCACTTTCATGAGAATCGCCTTCCCCGTAGTAATGGCACTTCTGGGAGGTACTGCACGTCTCACAGTTATGGTATCTGTTCTGCATGGAGGATATGTGATGTTTA 2315 0.3749 MDSSALVESTTLEPRDEMEFESHEAAYAYYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRRQDGKWYIYSFVKEHNHELLPAQAHFFRSHRSTDPLNNDVRMRRRKNLTAVSKLFSAYQNVDCLENFVRNQHDKGRSLVLEAGHAQLLLELFMHMQDENPKFFYAVDLNEEHRLRNVFWVDAKSMEDYAYFGDVVSFDTTYFTSKYKIPLVLFTGANHHVQPTLFGCALIADDSIYTFAWLLQTWLVAMGERAPQVILTDQNESIKAAVAAVLPATRHCFCLWHVLEKIPRQLVFLGSWHASFMEKFNKCIHRSWTEGQFEKRWWKLVDRFNLRDVEWVQSLYDDRTRWMPTFMKDISFAGLSTGSRSESMNSFFDNYIQGDTSLREFIERYKVILEDRYEEEAKANFDAWHETPELKSPSPFEKQMLLVYTHEIFKKFQVEVLGAAACHLKKENDEIITTYTVKDFEDDQSYMVQWNKSNSDICCSCHSFEYRGYLCRHAIVVLQMSGVFSIPPKYVLQRWTNAAMSRHPISERFDEVQSKVRRFNDLCRRAIILGEEGSLSQESYHIALATIKEALKQCGNLNSSVENDVRHEPLAIQAVCNVEGEHQSNNTSNKFPDPRVTAGNKASRTGLLGVDVGNAENNEGKKGMVPQLEGVSGQDGFHQMFHNAMPSLFHNVTSAQFHGAASTHFHENRLPRSNGTSGRYCTSHSYGICSAWRICDV 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00671 757 Pfam FAR1 DNA-binding domain 29 114 IPR004330 -
Bva11g00671 757 ProSiteProfiles Zinc finger SWIM-type profile. 506 542 IPR007527 GO:0008270
Bva11g00671 757 PANTHER PROTEIN FAR1-RELATED SEQUENCE 4 2 707 - -
Bva11g00671 757 Pfam SWIM zinc finger 509 540 IPR007527 GO:0008270
Bva11g00671 757 SMART 26again6 517 544 IPR006564 GO:0008270
Bva11g00671 757 Pfam MULE transposase domain 227 320 IPR018289 -
Bva11g00671 757 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 2 707 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00671 Bva-Chr11 9882906 9886603 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Bva11g00671 MULE 9.2e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g00671 - - gmx:100805273 1217.99