Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00636 ATGGCGACATCAGTTGAAGAGATCAACAAGATGGAAGAAGGAGAATGTCGTTCGTCAACAGGTTCTGGGTTTTGCGGTTCCAATCAAACAGTTCAGATGATACAGAAGATAATTGCAGAGGTAGTTGGGACATATATCTTAATATTTGCAGGGTGCGCGTCTGTGATTTTGCATAAACAAAACAAGGATATAAACTTTACTGGGGTCGCTTTGGTATGGGGTTCAGCAGTCTTGGTCATGATTTATTCAGTTGGTCACATCTCCGGTGCTCATTTTAATCCCACAGTCACAGTCACCTTCGCCATCTTTCGTCAATTCCCTATAAAACAGGTGCCTCTGTATATTATTGCGCAGTTTGTAGGATCTTTCCTGGCTAGTGGGAGTTTGTACCTTCTGTATGAACCAGATGAAAATGCTTATTTTGGAACAACACCGGCAGGATCCCATGTTCAATCCCTTGTCGTGGAGATTATTACcacatttttattactttttgttgCTTCTGCGGTTGCCACAGACAACAGAGCTATTGGAGAATTAGCAGGGATTGCTCTTGGGACAACAATCATGGTAGATGTGTTTATAGCTGGGCCTATCTCAGGAGCTTCTATGAACCCAGCCAGAAGCATTGGACCTGCAGTTATAATGCATGTTTATAAGGGATTATGGATTTATGTAGTTGGACCATTTGTTGGTGCCCTAGTTGGTGGCTTCTGCTACAATCTCATCAGATTTACAGACAAACCACTCAGGGAAATCAGCAAGAGTGCCTCATTCCTCAAAAGAACCAAGAGTGTTGCTGGATA 806 0.4194 MATSVEEINKMEEGECRSSTGSGFCGSNQTVQMIQKIIAEVVGTYILIFAGCASVILHKQNKDINFTGVALVWGSAVLVMIYSVGHISGAHFNPTVTVTFAIFRQFPIKQVPLYIIAQFVGSFLASGSLYLLYEPDENAYFGTTPAGSHVQSLVVEIITTFLLLFVASAVATDNRAIGELAGIALGTTIMVDVFIAGPISGASMNPARSIGPAVIMHVYKGLWIYVVGPFVGALVGGFCYNLIRFTDKPLREISKSASFLKRTKSVAG 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00636 268 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva11g00636 268 PRINTS Major intrinsic protein family signature 186 208 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva11g00636 268 PRINTS Major intrinsic protein family signature 73 97 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva11g00636 268 PRINTS Major intrinsic protein family signature 155 173 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva11g00636 268 PRINTS Major intrinsic protein family signature 110 129 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva11g00636 268 PRINTS Major intrinsic protein family signature 223 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva11g00636 268 Pfam Major intrinsic protein 29 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva11g00636 268 Gene3D Glycerol uptake facilitator protein. 3 255 IPR023271 -
Bva11g00636 268 PANTHER AQUAPORIN NIP2-1 4 262 IPR034294 -
Bva11g00636 268 TIGRFAM MIP: MIP family channel proteins 39 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva11g00636 268 CDD MIP 35 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva11g00636 268 ProSitePatterns MIP family signature. 91 99 IPR022357 -
Bva11g00636 268 SUPERFAMILY Aquaporin-like 31 253 IPR023271 -
Bva11g00636 268 PANTHER AQUAPORIN NIP-TYPE-RELATED 4 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00636 Bva-Chr11 9696431 9699035 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00636 6 261 Major Intrinsic Protein MIP AT5G37810 60.385 2.88e-112 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g00636 K09874 - rcu:8258188 351.288