Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00514 atggggaagaagaagaagagggttTCTTCCAAAGTGTGGTGTTACTACTGCGATCGCGAATTTGACGACGAGAAGATTTTGGTTCAGCATCAAAAAGCTAAGCACTTCAAGTGTCATGTCTGTCATAAGAAGCTATCCACCGCTGGTGGCATGGCTATCCATGTCCTTCAGGTTCACAAGGAGTCCGTCACCAAGGTGCCCAATGCAAAACCTGGTAGAGAGTCAACTGATATTGAAATATATGGAATGCAAGGGATTCCACCTGACATATTGGCATCTCATTATGGAGAGGAAGAAGATGATGTTCCATCAAAGGCAGCCAAAGTGGATGTACCATCAACCCAGCTTGTCGGGGGATTGGTTCCACCACCATTGGGTGTAGCATATCCTCCTCAACCAACATTGGGCACAGTGCCACCAATTTTCAATCCAACTATACCCATGCCTCGAACAGCTTGGGCAGTTCCTCGACCCCAGCCTTGGTATCCACAGCCTCCTGTTGGTTCAGTTCCTCCTCCTGCCCCATACGTACAGCAGCCATTATTTCCTGTGCAGAATATGAGGCCACCTCTACCATCAACCACTTCTCCTGCACTCCCAACTTCTCAGATTACTCCTCCTGGATTGCCTACATCTGCCCCTTCTGTTCCAGTTTCTCAACCCTTGTTTCCTGTCGTTGGAAATAACCATACACCTGTACAGAGTTCAACATTTTCTACCCCTTTGCTATCTATGAGTGTCCAATCAATAAGTCCAGCACTGCCTGCAAGTACCCCTGTTGATGCACACTCGGCTGCTAACTCTTCTGTGACAAATAGTTATCTGGCCATAGGGTTTTCAGGAGGGACAGCAAATAACTCACATTCTTATGCTTCTGGTCCAAATACTGGAGGTCCTTCAATTGGACCACCTCCAGTAATTGCAAACAAAGCTCCTGCTCCTCAGCCTGCTGTTAATGAGGTCTATTTGGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAACTAGCCAGATGAGCTCCATTGATGCAGCCATAGACAAGAGGATACTTGAAAGTAGGCTGGCTGGACGTATGGCATTTTA 1121 0.4585 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILASHYGEEEDDVPSKAAKVDVPSTQLVGGLVPPPLGVAYPPQPTLGTVPPIFNPTIPMPRTAWAVPRPQPWYPQPPVGSVPPPAPYVQQPLFPVQNMRPPLPSTTSPALPTSQITPPGLPTSAPSVPVSQPLFPVVGNNHTPVQSSTFSTPLLSMSVQSISPALPASTPVDAHSAANSSVTNSYLAIGFSGGTANNSHSYASGPNTGGPSIGPPPVIANKAPAPQPAVNEVYLVWDDEAMSMEERRMSLPKYQVHDETSQMSSIDAAIDKRILESRLAGRMAF 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00514 373 Gene3D Classic Zinc Finger 1 66 - -
Bva11g00514 373 PANTHER ZINC FINGER PROTEIN 207 1 373 - -
Bva11g00514 373 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Bva11g00514 373 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 373 - -
Bva11g00514 373 SMART c2h2final6 12 35 IPR013087 -
Bva11g00514 373 SMART c2h2final6 36 59 IPR013087 -
Bva11g00514 373 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Bva11g00514 373 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00514 Bva-Chr11 8721587 8726318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00514 1 353 C2H2 Transcription Factor Family AT1G30970 65.385 3.85e-147 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva11g00514 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g00514 - - gmx:100789368 593.578