Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00441 ATGGCTTCCCAATACCCTAATGCTTCAAACAATTCCATCCACTTTTTCAAGATCGCTCTGCAATCCTGCCTTCGAGATGGACAACTTAGAATTCCTAGAGGTTTTATGAGCAAATATGGGAAAAATTTACCAAACCCAGTATTTCTTGTGCTTCCAAACGGTGAAAAATGGGAAGTGAATTGGGTAAAACATGATGGTGATGTTTACTTTCAAAAGGGTTGGAAAGAATTTGCTGAACACTATTCTCTTGCTCATGggcattttcttgtttttcgaTATGAAGGAAAAACTAGATTTTATGTGCATATATTTGATACAAGTGCCTTGGAAATAAGCTATCCAATGGTTAAAAGCAGTGAAATTTCTCATGAATGTCcaccaagaaagaggaaaagatcAAGATCTCCAATCAAAAAATCTCATCAATCTGATAAAACGAGAAGCAGCTTAAGAAGAGAAGCTAAAAGCAACTTGAAGCAACAATCTGGAATGTCAAAACTTCATTTGGAATTGGATTTTCCTGAGACAAAAGGAAACATTAGAAGAGGCTTATTTTCCCCTGAGAGAGCTCTGGAGATAGCCCAGGCTTCCTGCTCAAAGACTACGAATCCATATTTCATTCAGATCATTCACAAAACATactttatcaataattttatgATCATACCAATCCACTTTTCCAAAACAAATCTCAACAGGAAGAAAGGAACAGCCACCCTTAGGGTTTCTGAGAGAAGCTGGTCTGTTAACTTCTACAGTTCCCATAATGGAACTTACTATCTTGGTTCTGGTTGGAAGacttttgtaaaagaaaataatctaaaacCAGGAGATGTTTGTGTCTTTGAGATGACTCAAAGCACTGAGGTTTCATTCGATGTTGCTATTTTCCGTGTCACAAAAAGATCGAGCTCTCCCTCGTTGAcagCTCAAGGGCATGGAGAGAAACAATTGAACAAAGACAAACTGCAGAAAGGTCCTCTAGATAGTGTGGAAGCTTTCAGATTGAAggataattttccaaaaagagaaagcagtGAAGAAAATCACAATTCTGATGAACTACAAAAGCTGCCAGGaacccaaataaaaaatcacttCACCGTTCATATAAAGCCTCAAAATGTCATGGTACCACCGAATATACCAATAGATTTTGCCAAGAGGTACATTGGACCTGGAGGAAAATATGCAAGTGTGCAAGTTGGGGAGAGATCATGGACCAGTCTAAAGGTGGCGTGTTATCCAAGTCATGGTGTTGCTAGATTTTCTGCAGGCTGGTCTGCATTTCTGACTAAATGCAACTTGAAGCAGGGAGATACTTGTCATTTTCAGCTCATTGATGAGCAAAATCTTGCATTCAAGTTTACAAAACTGTA 1379 0.3532 MASQYPNASNNSIHFFKIALQSCLRDGQLRIPRGFMSKYGKNLPNPVFLVLPNGEKWEVNWVKHDGDVYFQKGWKEFAEHYSLAHGHFLVFRYEGKTRFYVHIFDTSALEISYPMVKSSEISHECPPRKRKRSRSPIKKSHQSDKTRSSLRREAKSNLKQQSGMSKLHLELDFPETKGNIRRGLFSPERALEIAQASCSKTTNPYFIQIIHKTYFINNFMIIPIHFSKTNLNRKKGTATLRVSERSWSVNFYSSHNGTYYLGSGWKTFVKENNLKPGDVCVFEMTQSTEVSFDVAIFRVTKRSSSPSLTAQGHGEKQLNKDKLQKGPLDSVEAFRLKDNFPKRESSEENHNSDELQKLPGTQIKNHFTVHIKPQNVMVPPNIPIDFAKRYIGPGGKYASVQVGERSWTSLKVACYPSHGVARFSAGWSAFLTKCNLKQGDTCHFQLIDEQNLAFKFTKL 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00441 459 Pfam B3 DNA binding domain 21 106 IPR003340 GO:0003677
Bva11g00441 459 Pfam B3 DNA binding domain 207 298 IPR003340 GO:0003677
Bva11g00441 459 Gene3D - 7 108 IPR015300 -
Bva11g00441 459 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Bva11g00441 459 SUPERFAMILY DNA-binding pseudobarrel domain 366 451 IPR015300 -
Bva11g00441 459 PANTHER B3 DOMAIN-CONTAINING 327 456 - -
Bva11g00441 459 PANTHER B3 DOMAIN-CONTAINING 6 299 - -
Bva11g00441 459 MobiDBLite consensus disorder prediction 339 354 - -
Bva11g00441 459 SUPERFAMILY DNA-binding pseudobarrel domain 200 299 IPR015300 -
Bva11g00441 459 ProSiteProfiles B3 DNA-binding domain profile. 205 300 IPR003340 GO:0003677
Bva11g00441 459 MobiDBLite consensus disorder prediction 122 162 - -
Bva11g00441 459 CDD B3_DNA 14 105 IPR003340 GO:0003677
Bva11g00441 459 CDD B3_DNA 382 457 IPR003340 GO:0003677
Bva11g00441 459 CDD B3_DNA 204 298 IPR003340 GO:0003677
Bva11g00441 459 Gene3D - 344 458 IPR015300 -
Bva11g00441 459 Gene3D - 186 301 IPR015300 -
Bva11g00441 459 MobiDBLite consensus disorder prediction 339 359 - -
Bva11g00441 459 SUPERFAMILY DNA-binding pseudobarrel domain 10 107 IPR015300 -
Bva11g00441 459 SMART B3_2 15 107 IPR003340 GO:0003677
Bva11g00441 459 SMART B3_2 206 300 IPR003340 GO:0003677
Bva11g00441 459 MobiDBLite consensus disorder prediction 139 154 - -
Bva11g00441 459 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 327 456 - -
Bva11g00441 459 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00441 Bva-Chr11 8155328 8158990 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00441 382 457 B3 DNA Binding Superfamily AT3G18990 34.211 9.69e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva11g00441 B3 7.8e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g00441 - - lang:109332968 275.018