LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva11g00420	ATGGATTCAGCTGATCCATCAGAGGTGCTAGAAGGTTGGAATTACAATGTTATTGAAAGGATTGGAGGTGAAGGTCGTCCTGATTACAAGTGCCTGAATCGTGACACTAGAGCATACATTGATAAGAAATGTCCATTCACTGGCACCGTTTCCATCCGGGGTCGCATTCTTGCCGGTACTTGCCATAGTGCCAAGATGAACAGGACTATCATTGTTCGCCGCATCTACCTtcattatattaagaaataccAAAGGCAAGGCTCCTTCGCCTCTCAATATATCGAGTACGAAAAGAGGCACTCAAACATTCCTGCTCACATATCTCCATGCTTCCGCGTGAAGGAGGGAGACCATGTCAATACTGGGCAGTGCAGGCCACTCTCCAAGACTGTTAGATTTAATGTGTTGAAAGTGATTCCAGCTGGGTCTTCTGGAGGTGTGAAGAAAGCTTTTACTGCAATTTA	464	0.4418	MDSADPSEVLEGWNYNVIERIGGEGRPDYKCLNRDTRAYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRIYLHYIKKYQRQGSFASQYIEYEKRHSNIPAHISPCFRVKEGDHVNTGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI	154

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva11g00420	154	Pfam	Ribosomal_S17 N-terminal	37	57	IPR032440	-
	Bva11g00420	154	Gene3D	-	32	154	-	-
	Bva11g00420	154	Pfam	Ribosomal protein S17	59	137	IPR000266	GO:0003735\|GO:0005840\|GO:0006412
	Bva11g00420	154	PANTHER	BNAA06G38660D PROTEIN	38	152	-	-
	Bva11g00420	154	SUPERFAMILY	Nucleic acid-binding proteins	53	142	IPR012340	-
	Bva11g00420	154	PRINTS	Ribosomal protein S17 family signature	83	106	IPR000266	GO:0003735\|GO:0005840\|GO:0006412
	Bva11g00420	154	PRINTS	Ribosomal protein S17 family signature	126	133	IPR000266	GO:0003735\|GO:0005840\|GO:0006412
	Bva11g00420	154	PRINTS	Ribosomal protein S17 family signature	116	126	IPR000266	GO:0003735\|GO:0005840\|GO:0006412
	Bva11g00420	154	PANTHER	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	38	152	IPR000266	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva11g00420	Bva-Chr11	7994494	7995305	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva11g00420	38	154	Cytoplasmic Ribosomal Protein Gene Family	AT5G23740	79.487	7.45e-63	188

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva11g00420	K02949		-	pvy:116138039	201.445