Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00417 ATGAAATCACCATTGTTGTCACCTCGGccacaaaagaaactaaaggTTGGCAGAGATAGAGATTTGGAGCCAAGGTCTAGtctgaaaagaaatcatttgcATGTCCaaactgaaaagaaatcaattaatgGCAATGCACGCGTGAAATCTACCAAGAAAGAATTGGGAGACATGGGAGGAAATGTACTCACCAACAAGAAGTGCCCAAATTCTGAGCATAAAACAAGGATGCAACGCCCATTAACTTTTACTCAGAAGACTGAAGCCTTGAAGAGAGCGGAGACTTTCAGATCTGACAAACCATTTTTCTCAGTAGTCATACAAAGATCATATCTTTCCAACAATTCTTTGCATATACCATCAAAATTTGCACAAGAACATATAGAGAACAAGCAAGGTGATGTAATGCTTGAAGTCTCCAAGGGGAGAACTTGGTCTGCCACATATAATAATGGAAAATTACGTTCTGGCTGGCATAAATTTGCCAAAGATAACAATCTAAAAGTGGGTGACGCTTGTGTTTTTGAGATGACTAATAGCATTGAACTTTCACTAAAAGTTTCGATTTACCAGGCTCTTGAAGTTCCAAGCTGCTCATTTTCTCAAGTATGTACTGAAAGACTTCTCGAGAATTTTACCacagaaaggaagaagagcaTATTGATTCGGGTTGGGGAAAGACAATGGcatataaatttgatatgTGATTTGCAGCAGGAGGGATCATCAAGCCGCCGGTTTTCTGCCGGTTGGACTGCATTTTCCagggaaaataatttgaaggTTGGAGATGCTTGCATCTTTGAGCTGATTAAGAGAGATGATGCAGTGCTGGATGCTCATATTTTCAGATGCAACAGTTA 863 0.3546 MKSPLLSPRPQKKLKVGRDRDLEPRSSLKRNHLHVQTEKKSINGNARVKSTKKELGDMGGNVLTNKKCPNSEHKTRMQRPLTFTQKTEALKRAETFRSDKPFFSVVIQRSYLSNNSLHIPSKFAQEHIENKQGDVMLEVSKGRTWSATYNNGKLRSGWHKFAKDNNLKVGDACVFEMTNSIELSLKVSIYQALEVPSCSFSQVCTERLLENFTTERKKSILIRVGERQWHINLICDLQQEGSSSRRFSAGWTAFSRENNLKVGDACIFELIKRDDAVLDAHIFRCNS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00417 287 Gene3D - 195 287 IPR015300 -
Bva11g00417 287 Gene3D - 81 194 IPR015300 -
Bva11g00417 287 MobiDBLite consensus disorder prediction 12 28 - -
Bva11g00417 287 SMART B3_2 200 286 IPR003340 GO:0003677
Bva11g00417 287 SMART B3_2 103 193 IPR003340 GO:0003677
Bva11g00417 287 SUPERFAMILY DNA-binding pseudobarrel domain 209 286 IPR015300 -
Bva11g00417 287 CDD B3_DNA 220 284 IPR003340 GO:0003677
Bva11g00417 287 MobiDBLite consensus disorder prediction 51 77 - -
Bva11g00417 287 MobiDBLite consensus disorder prediction 1 28 - -
Bva11g00417 287 SUPERFAMILY DNA-binding pseudobarrel domain 98 194 IPR015300 -
Bva11g00417 287 CDD B3_DNA 101 190 IPR003340 GO:0003677
Bva11g00417 287 PANTHER B3 DOMAIN-CONTAINING 210 285 - -
Bva11g00417 287 PANTHER B3 DOMAIN-CONTAINING 17 192 - -
Bva11g00417 287 Pfam B3 DNA binding domain 102 190 IPR003340 GO:0003677
Bva11g00417 287 Pfam B3 DNA binding domain 217 284 IPR003340 GO:0003677
Bva11g00417 287 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 210 285 - -
Bva11g00417 287 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 17 192 - -
Bva11g00417 287 ProSiteProfiles B3 DNA-binding domain profile. 227 286 IPR003340 GO:0003677
Bva11g00417 287 ProSiteProfiles B3 DNA-binding domain profile. 102 193 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00417 Bva-Chr11 7951049 7952624 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00417 220 286 B3 DNA Binding Superfamily AT3G18990 41.791 3.97e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva11g00417 B3 1.9e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g00417 - - lja:Lj0g3v0253159.1 143.28