Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00416 ATGGCTTTTCTTCACCAGCAAAATGGAATATATTTCTTCAGGATTCTTCTCGAACGTTCTCTCCAATTTCTCAGAATTCCGAGAAAATTTTCCAGGAAATATGGGTTTAATCTGCCAAACCCAGTGTTTCTGAAGCCTCCGGATGGAACtgaatggaaaatattttggatgAAGAGTGATGGGGAGATTTGGTTTAAAAATGGTTGGAAAGAATTTGTTAGGCATTACTCTCTAGAAAGTGGATATTTAGTGCTGTTCAATGGTGATTCAGATGAAATCTTGGGTGAAAAGACTCCACATTTGAAGGCTAAATCGAAATTATCGCCGTTGTCATCACCTCGGCctcaaaagaaaccaaaagttGGCACAAATGGAGAATTTGAACCAAGTTCTAGTCTTAAAAGCATTCATTTTCCTGTCCTAACTGAAGGTAGAGAACTAGGGAAATCAATAAATGGAAATCCACATTTGAAATCTATCAAGGAAGAATTGGAAGAAGACCACATTGGAGGAAATGTATTCACCCACAAGAAATGCCCAAATTCtgagaagaaaacaaggatGCAAACATTAACTGCTACCGAGAAGACTGAAGCTTTGAAGAGAGCAAAGAGTTTCCGATCTGAAAATccatttttcactttaatcaTACAGCCATCATATGTTTCCAACAACAGTCCATTGAATATACCATCAAAATTTGTAGAGGAACATATGGAGAAAAAGCAAGGTACTGTTATCCTTGAAGTCCTGGGGGGGAGAACTTGGTCTGCTACATATATTGGTCACAAAATGTGTTCTGGCTGGTATAAATTTGCCAGAGATAATAATCTAAAAGTGGGTGATGTTTGTGTTTTTGAGATGACTAATAGCATTGAACTTTCattcaaagtttcaatttaCCGAGTGCCTCAAGATCCAAGTTGCTCATTTTCACAAGGGAAAACCTCGAAGCCGAAAGTCCCTAAATGTTTACAGAACAGTATGAAAAATGAGGCTCTTGGAAAAGCAATGTCtgccaaattttcaaatccaaTTTTCAAGGTTTTCATGCAAAAAGCTTATGTTTCTGGTCGATCAGATTTGCGTGTGCCATTGGAATTTGccaagaaatatttaaatgtcAAAATGGATCCTGTGCTTGTCACTCTTCGGAGTGTAGACGGTAGACTTTGGTCTGTCAAATACATATCTAGATTAAGCCAGGGAAGACTTTGCTATGAGTTACGTCGTGGATGGAAGCAATTTGTGTTGGACAATAATTTGCAAATAGGTGATGTATGTGTCTTTGAGCTCATTGATAGAATCAAGCTAACATTTGATGTTACAATTTTTCGAGACGCTAAAGATGGGGctcatttaatatattcagGGACTAAAGTTGATCGTGAAGAACCTTTGATGACTAAAGTTAAATCAGAGAACTCTAATATATGTGACCAATTCAGATCTCAAGTTAAATTTGGTGGGAAGAGTACTGAAAGAACTTCAACATCATTGCTTAAACATGGGGGAATAACAAGATTTCTCAAAGAAGTCGAAAAATTCGAGTCAGACAATCCTTATTTCACACTTTGTATCAAGCCTTATCATTTGCAGCGTGGCAAACCGTTTGTACCGAAAGACTTCTGCAAGAGTTGTACTAAAGAAAGGGAGAAGAGTATGTTGATTCAGATTGTGCATAGCTTGGAGCTTTTGAATTGTACTGTGAATTTGATGTATGAATATTTGATCCCGAATGAAAGTAAAGCTTTTGAGAAGACAAAATCTTACAAATCTTGGAATCCATCTTTCAAGTTTGGAATGGAAAAATCTCGTGTCCATGGCAGAACAAACTtgGATATCACCTTCCGGAGAAAGATGGTAGACTATGGTTTGTTACGATCAACTGCAAAAAATCTGGTCAATAGAGATTTTGCATGGatggaagaaatatttggtaaACAATG 1949 0.3463 MAFLHQQNGIYFFRILLERSLQFLRIPRKFSRKYGFNLPNPVFLKPPDGTEWKIFWMKSDGEIWFKNGWKEFVRHYSLESGYLVLFNGDSDEILGEKTPHLKAKSKLSPLSSPRPQKKPKVGTNGEFEPSSSLKSIHFPVLTEGRELGKSINGNPHLKSIKEELEEDHIGGNVFTHKKCPNSEKKTRMQTLTATEKTEALKRAKSFRSENPFFTLIIQPSYVSNNSPLNIPSKFVEEHMEKKQGTVILEVLGGRTWSATYIGHKMCSGWYKFARDNNLKVGDVCVFEMTNSIELSFKVSIYRVPQDPSCSFSQGKTSKPKVPKCLQNSMKNEALGKAMSAKFSNPIFKVFMQKAYVSGRSDLRVPLEFAKKYLNVKMDPVLVTLRSVDGRLWSVKYISRLSQGRLCYELRRGWKQFVLDNNLQIGDVCVFELIDRIKLTFDVTIFRDAKDGAHLIYSVDREEPLMTKVKSENSNICDQFRSQVKFGGKSTERTSTSLLKHGGITRFLKEVEKFESDNPYFTLCIKPYHLQRGKPFVPKDFCKSCTKEREKSMLIQIVHSLELLNCTVNLMYEYLIPNESKAFEKTKSYKSWNPSFKFGMEKSRVHGRTNLDITFRRKMVDYGLLRSTAKNLVNRDFAWMEEIFGKQ 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00416 646 SMART B3_2 347 448 IPR003340 GO:0003677
Bva11g00416 646 SMART B3_2 12 107 IPR003340 GO:0003677
Bva11g00416 646 SMART B3_2 213 304 IPR003340 GO:0003677
Bva11g00416 646 Gene3D - 325 449 IPR015300 -
Bva11g00416 646 Gene3D - 190 305 IPR015300 -
Bva11g00416 646 Gene3D - 503 572 IPR015300 -
Bva11g00416 646 PANTHER B3 DOMAIN-CONTAINING 476 556 - -
Bva11g00416 646 ProSiteProfiles B3 DNA-binding domain profile. 9 100 IPR003340 GO:0003677
Bva11g00416 646 PANTHER B3 DOMAIN-CONTAINING 6 87 - -
Bva11g00416 646 PANTHER B3 DOMAIN-CONTAINING 89 303 - -
Bva11g00416 646 PANTHER B3 DOMAIN-CONTAINING 325 447 - -
Bva11g00416 646 CDD B3_DNA 11 86 IPR003340 GO:0003677
Bva11g00416 646 ProSiteProfiles B3 DNA-binding domain profile. 347 448 IPR003340 GO:0003677
Bva11g00416 646 CDD B3_DNA 211 302 IPR003340 GO:0003677
Bva11g00416 646 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 325 447 - -
Bva11g00416 646 SUPERFAMILY DNA-binding pseudobarrel domain 341 446 IPR015300 -
Bva11g00416 646 Pfam B3 DNA binding domain 348 446 IPR003340 GO:0003677
Bva11g00416 646 Pfam B3 DNA binding domain 20 90 IPR003340 GO:0003677
Bva11g00416 646 Pfam B3 DNA binding domain 213 302 IPR003340 GO:0003677
Bva11g00416 646 SUPERFAMILY DNA-binding pseudobarrel domain 8 87 IPR015300 -
Bva11g00416 646 CDD B3_DNA 345 446 IPR003340 GO:0003677
Bva11g00416 646 ProSiteProfiles B3 DNA-binding domain profile. 213 304 IPR003340 GO:0003677
Bva11g00416 646 Gene3D - 4 97 IPR015300 -
Bva11g00416 646 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 476 556 - -
Bva11g00416 646 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 89 303 - -
Bva11g00416 646 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 87 - -
Bva11g00416 646 SUPERFAMILY DNA-binding pseudobarrel domain 208 305 IPR015300 -
Bva11g00416 646 MobiDBLite consensus disorder prediction 102 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00416 Bva-Chr11 7943670 7947959 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00416 330 446 B3 DNA Binding Superfamily AT3G18990 30.769 1.07e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva11g00416 B3 5.2e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g00416 - - lang:109359275 266.929