Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00415 ATGTCTCCTTCTTGTGAATCACCCATGCATGCATCATCTGCTCACATGCAATGGCCTACTTCTACACAGAGAATTCCGAGAAAATTTACCAGCAAATATGGGTTTAATTTGCCAAACCCAGTGTTTCTGAAGCCTCCAGATGGAACtgaatggaaaatattttggatgAAGAGTGATGGGGAGATTTGGTTTCAAAATGGTTGGAAAGAATTTGTTAGGCATTACTCTCTAGAAAGTGGATATTTAGTGCTGTTCAAGTATGTAGAAAGTTCCCATTTTGATGTTCTCTTATTTGACAAGACTACCCTACAAATAGAGTATCCTTCTCATGTCCCTTATGATGAAAATCCCAACCTTGATGATCAATTCAGTGATGATTCAGTTGAAATCTTGGGTGAAAAACCTCCACACTTGAAGGCTAAATCGAAATTACCATTATTGTCACCTCGGCCCCAGAAGAAACCAAAGGTTGGCACAAATGGAGATTTTGAACCAAGTTCTAGTCTTAGAAGCATTCATTTTCCTCTTCAAACTGAAGATAGAGAATCTCAAGGTAGAGAACTAGAGAAATCAATTAATGGCAATGCACATGTGAAGTCTATCAAGGAAGAATTGGAAGAGGAACATATGGAGAAAAAGCAAGGTACTGTTATCCTTGAAGCCTTGGAGGGGAGAACTTGGTCTGCTACATATATTGGTCACAAAATGCATTATGGCTGGCATAAATTTGCTAGAGATAATAATCTAAAAGTGGGTGATGCTTGTGTTTTTGAGATGACCAATAGCATTGAACTTTCATTCAAAGTTTTGATTTACCGAGCGCCTGAAGATCCAGGTTGCTCATTTTCACAAGGGAAAACCTTGAAACCAAGAGTCCCTATGAGGATACCGAACACTGTTAAAAATAAGGCTCTTGGAAAAGCAATGTCagccaaattttcaaatccatTTTTCAAGGTTTTCATGCAAAAATCTTATGTTTCTGGCCGATCAGATTTATGTGTACCTTTGGAATTTGccaagaaatatttaaatttcgAAACGAATAATACAATGGTTGTCACTCTTCGGAGTGTAGATGGTAGACTTTGGTCTGTCAAATACATATCTAGATTAAACCGTGGAAGAACTTGCTATGAGTTAAGACGCGGATGGAAGCAATTTGCGGCGGacaataatttacaaataGGTGATGTTTGTGTCTTTGAGCTCATTGATAGAATCAAGCTTACATTTGGTGTTACAATCTTTCGAGACACTAAAGATGGATCTCATTTAATGTATTCAGCTCGAGGGATTAAAGTTGATCGTGTAGAACTTGAGATTAAGCAGGATATTGTGAAAGGAATTACTAAATCTGAGTGGCCTAAGATGTCAGACCAGTTCAGATCTCGAGTTGAACTCGGTGGTAAGAGTactcaaaaaatttcaacatcaTTGCTTAAGCATGGAGGAAAAGGTGTTCTTGAAAAAGTCGTAAAATTTGAGTCAGACAATCCCCATTTCACAGTTTGTATTAGGCCTTATCATTTGCACCACGGCAAACCGTTTGTACCTAAAGACTTCTGCATGAGCTGTACTACAGCAAAGGAGAAGAATATGCTGATTCAGGCAGGTGAAAGATCATGGCATGCAAAGTTGATTTTTGATTGGCATAGGTCTTCATCCAAGTTTTCTGCTGGTTGGCCTACATTTGCAAGGGAAAATAACTTGAAAGTCGGAGATGTTTGCATCTTTGATCTGATTAATAGAGAAGAAGCAGTTTTGAAAGTTCATATTTTCAGATGCCTCGGTTA 1796 0.3675 MSPSCESPMHASSAHMQWPTSTQRIPRKFTSKYGFNLPNPVFLKPPDGTEWKIFWMKSDGEIWFQNGWKEFVRHYSLESGYLVLFKYVESSHFDVLLFDKTTLQIEYPSHVPYDENPNLDDQFSDDSVEILGEKPPHLKAKSKLPLLSPRPQKKPKVGTNGDFEPSSSLRSIHFPLQTEDRESQGRELEKSINGNAHVKSIKEELEEEHMEKKQGTVILEALEGRTWSATYIGHKMHYGWHKFARDNNLKVGDACVFEMTNSIELSFKVLIYRAPEDPGCSFSQGKTLKPRVPMRIPNTVKNKALGKAMSAKFSNPFFKVFMQKSYVSGRSDLCVPLEFAKKYLNFETNNTMVVTLRSVDGRLWSVKYISRLNRGRTCYELRRGWKQFAADNNLQIGDVCVFELIDRIKLTFGVTIFRDTKDGSHLMYSARGIKVDRVELEIKQDIVKGITKSEWPKMSDQFRSRVELGGKSTQKISTSLLKHGGKGVLEKVVKFESDNPHFTVCIRPYHLHHGKPFVPKDFCMSCTTAKEKNMLIQAGERSWHAKLIFDWHRSSSKFSAGWPTFARENNLKVGDVCIFDLINREEAVLKVHIFRCLG 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00415 598 ProSiteProfiles B3 DNA-binding domain profile. 184 275 IPR003340 GO:0003677
Bva11g00415 598 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 299 419 - -
Bva11g00415 598 SMART B3_2 502 597 IPR003340 GO:0003677
Bva11g00415 598 SMART B3_2 188 275 IPR003340 GO:0003677
Bva11g00415 598 SMART B3_2 318 420 IPR003340 GO:0003677
Bva11g00415 598 SMART B3_2 9 101 IPR003340 GO:0003677
Bva11g00415 598 MobiDBLite consensus disorder prediction 1 20 - -
Bva11g00415 598 CDD B3_DNA 316 418 IPR003340 GO:0003677
Bva11g00415 598 PANTHER B3 DOMAIN-CONTAINING 299 419 - -
Bva11g00415 598 CDD B3_DNA 215 273 IPR003340 GO:0003677
Bva11g00415 598 ProSiteProfiles B3 DNA-binding domain profile. 318 420 IPR003340 GO:0003677
Bva11g00415 598 MobiDBLite consensus disorder prediction 141 168 - -
Bva11g00415 598 SUPERFAMILY DNA-binding pseudobarrel domain 20 108 IPR015300 -
Bva11g00415 598 CDD B3_DNA 500 595 IPR003340 GO:0003677
Bva11g00415 598 ProSiteProfiles B3 DNA-binding domain profile. 501 597 IPR003340 GO:0003677
Bva11g00415 598 ProSiteProfiles B3 DNA-binding domain profile. 25 101 IPR003340 GO:0003677
Bva11g00415 598 PANTHER B3 DOMAIN-CONTAINING 473 596 - -
Bva11g00415 598 PANTHER B3 DOMAIN-CONTAINING 21 274 - -
Bva11g00415 598 CDD B3_DNA 24 99 IPR003340 GO:0003677
Bva11g00415 598 Gene3D - 297 421 IPR015300 -
Bva11g00415 598 Gene3D - 180 276 IPR015300 -
Bva11g00415 598 Gene3D - 482 597 IPR015300 -
Bva11g00415 598 SUPERFAMILY DNA-binding pseudobarrel domain 205 276 IPR015300 -
Bva11g00415 598 Gene3D - 7 102 IPR015300 -
Bva11g00415 598 SUPERFAMILY DNA-binding pseudobarrel domain 495 595 IPR015300 -
Bva11g00415 598 Pfam B3 DNA binding domain 317 418 IPR003340 GO:0003677
Bva11g00415 598 Pfam B3 DNA binding domain 206 274 IPR003340 GO:0003677
Bva11g00415 598 Pfam B3 DNA binding domain 502 595 IPR003340 GO:0003677
Bva11g00415 598 Pfam B3 DNA binding domain 23 100 IPR003340 GO:0003677
Bva11g00415 598 SUPERFAMILY DNA-binding pseudobarrel domain 312 418 IPR015300 -
Bva11g00415 598 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 473 596 - -
Bva11g00415 598 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 21 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00415 Bva-Chr11 7940772 7942588 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00415 495 596 B3 DNA Binding Superfamily AT3G18990 36.893 3.92e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva11g00415 B3 2.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g00415 - - fve:101294874 254.218