Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00414 ATGGCTTCTCTTCACCAGCAAAATGAAACATATTTCTTCAGGATTCTCCTCGAACGTTCTCTCAAATTGCTTAAAATTCCAAGAAAATTTACCAGCAAATGTGGGTTTAATCTGCCAAACCCAGTGTTTCTGAAGCCTGCGGATGGTACtgaatggaaaatattttgggcAAAGAGTAAGAGTGATGGtgacatttggtttcaaaATGGTTGGGAAGAATTTGTTAGGCATTACTCTCTAGATATTGGGTACTTAGTGCTGTTCAAGTATGTAGAAAGTTCTCATTTTGATGTCCTTTTATTTGACAAGAGTACCCTACAAATAGAGTATCCTTCTCATGTTCCTTATAATGAAAAGCCCAACCTTGATGATGATCATTTTAGTGATGACTTAGTTGAAATATTGAGCAAAAAACCTCACTCTGTTGATAACTCATTTGAAATCTTGAGTGAAAAACCTAATTCTAATGATGACTTAGTTGAAATTTCTAGTGAAAAACCTCAATTTTGTGATGACCCAATTGAAATCTTCAATGAGAAACCTCAGTCTAGTGATGACTCGGATAAAAACTTGAGTGAAAAACCTTCACACTCTAAGACTAAAATGAAATCACCATTGTTGTCGCCTCGGCctcaaaagaaactaaaagtTGGCACAAATGGAGATTTTGAACCAAGTTCTAGCCTGAAAAGCAGTCATTTTCATGTCCAAACTGAAGGTAGACAGTCTCAAGGCAAAACACTAGAGAAATCAAGTAATGGCAATGCACATGTGAAATCTACCAAGAAAGAATTAGAAGCAGAAGACATGAGAGGAAATGCATTCACAAACAATAAGTGCCCAAAATCTGAGGAGAAAACAAGGAAGCAAACAATAACTGATTCTAATAAGAAAGAAGCTTTGAAGAGAGCAAAGAATTTCAGATCTGAAAATCCATTTTTCATAGTAATCATACAACCATCATATATTTCGACCAGGTCTTCATTGtATGTACCAATAAAATTTGCAGATGAACatttagagaaaaaggaaggtTCTCTCATCCTTGAAGACTTGAAGGGGACAACTTGGTCTGCTACATATAATGGTCGCAGAATACTTTCTGGTTGGCATAAATTTACCAGAGATAATGATCTAAAAGTGGGTGATGCTTGTGTCTTTGAGATGACCAATAGCATTGAactttcattcaaaattttgatttaccGAGCTCATGAAGATCCAAGTTGCTCATTTTCATCACAAGggaaaaaattgaagcCGAAAGTCCCTAGAATGATGCCGAACACTATGAAAAATGAGGCTCTTCGAAAAGCCATGTCTGCTGAATTTCCAAATCCATTTTTCAAGATTGTCATGCAAAACACTTGTGTTTCTTGTCGACCATATTTGCGTGTACCGATTCaatttatcaagaaatattTCAATGACATAAACAATACTGTGCTTGTCACTCTCCGGAGAGTAGATGGCAGACTTTGGTCTGTCAAATACACGCCTAGATTGTACCAGGGAAGAACATACTATGAATTTCATCGTGGATGGAAGCAATTTGTAGTggacaataatttaaaagtaggTGATGTTTGTGTCTTTGAGCTCATTGATAGAATCAAGATTACATTTGATGTTACAATTTTCCGAGACACTAAAGATGGAGCTCATAAAATGTATTCAGCTCAAGGGACTAAAGCTGACAGCTACGAACCCGAGATTAGGCCGGAAACCAGGACAAAAAGTACTTGTACAAGTAAAGTTAAATCAGAGAAGCCTGAGTTGTCTGATCAATTCAGATCTCAAGTAAAATTCGGTAGGaaaattggtcaaagaatGTCAACATTATTGCTTAAGCATGGGGGAAAAAGAGTTCTCCAAAAAGTCAAAGAATTTGGGTCGGACAATCCCCATTTCACAGTTTGTATTAAGCCTTGTTATGTGGATGGTGGAAAACCGTTTTTACCAAAAGACTTCTACATGAGTTTTATCACAGAAAGGGAGAAGAATGTGTTGATACAGGTGGGCGAAAGATCATGGCATGCAAAGATGATATGTCATTGGAGGGTATCATCAGCCAAGTTTTCTGCCGGTTGGCCTGCATTTGCAAGGGAAAATAACTTGCAAGTTGGAGATGTTTGCATCTTTGAGCTGATTAACAGAGATGATGCAGTGCTGGAAGCTCATATTTTCAGACACCACAGTTA 2201 0.3507 MASLHQQNETYFFRILLERSLKLLKIPRKFTSKCGFNLPNPVFLKPADGTEWKIFWAKSKSDGDIWFQNGWEEFVRHYSLDIGYLVLFKYVESSHFDVLLFDKSTLQIEYPSHVPYNEKPNLDDDHFSDDLVEILSKKPHSVDNSFEILSEKPNSNDDLVEISSEKPQFCDDPIEIFNEKPQSSDDSDKNLSEKPSHSKTKMKSPLLSPRPQKKLKVGTNGDFEPSSSLKSSHFHVQTEGRQSQGKTLEKSSNGNAHVKSTKKELEAEDMRGNAFTNNKCPKSEEKTRKQTITDSNKKEALKRAKNFRSENPFFIVIIQPSYISTRSSLYVPIKFADEHLEKKEGSLILEDLKGTTWSATYNGRRILSGWHKFTRDNDLKVGDACVFEMTNSIELSFKILIYRAHEDPSCSFSSQGKKLKPKVPRMMPNTMKNEALRKAMSAEFPNPFFKIVMQNTCVSCRPYLRVPIQFIKKYFNDINNTVLVTLRRVDGRLWSVKYTPRLYQGRTYYEFHRGWKQFVVDNNLKVGDVCVFELIDRIKITFDVTIFRDTKDGAHKMYSAQGTKADSYEPEIRPETRTKSTCTSKVKSEKPELSDQFRSQVKFGRKIGQRMSTLLLKHGGKRVLQKVKEFGSDNPHFTVCIKPCYVDGGKPFLPKDFYMSFITEREKNVLIQVGERSWHAKMICHWRVSSAKFSAGWPAFARENNLQVGDVCIFELINRDDAVLEAHIFRHHS 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00414 733 CDD B3_DNA 447 548 IPR003340 GO:0003677
Bva11g00414 733 Gene3D - 617 732 IPR015300 -
Bva11g00414 733 Gene3D - 291 407 IPR015300 -
Bva11g00414 733 Gene3D - 428 551 IPR015300 -
Bva11g00414 733 PANTHER B3 DOMAIN-CONTAINING 416 549 - -
Bva11g00414 733 ProSiteProfiles B3 DNA-binding domain profile. 636 732 IPR003340 GO:0003677
Bva11g00414 733 PANTHER B3 DOMAIN-CONTAINING 4 404 - -
Bva11g00414 733 MobiDBLite consensus disorder prediction 256 270 - -
Bva11g00414 733 CDD B3_DNA 312 403 IPR003340 GO:0003677
Bva11g00414 733 MobiDBLite consensus disorder prediction 221 255 - -
Bva11g00414 733 SUPERFAMILY DNA-binding pseudobarrel domain 443 548 IPR015300 -
Bva11g00414 733 PANTHER B3 DOMAIN-CONTAINING 566 731 - -
Bva11g00414 733 SMART B3_2 314 405 IPR003340 GO:0003677
Bva11g00414 733 SMART B3_2 637 732 IPR003340 GO:0003677
Bva11g00414 733 SMART B3_2 448 550 IPR003340 GO:0003677
Bva11g00414 733 SMART B3_2 12 104 IPR003340 GO:0003677
Bva11g00414 733 MobiDBLite consensus disorder prediction 565 585 - -
Bva11g00414 733 SUPERFAMILY DNA-binding pseudobarrel domain 8 111 IPR015300 -
Bva11g00414 733 MobiDBLite consensus disorder prediction 178 200 - -
Bva11g00414 733 SUPERFAMILY DNA-binding pseudobarrel domain 630 731 IPR015300 -
Bva11g00414 733 ProSiteProfiles B3 DNA-binding domain profile. 314 405 IPR003340 GO:0003677
Bva11g00414 733 SUPERFAMILY DNA-binding pseudobarrel domain 309 407 IPR015300 -
Bva11g00414 733 ProSiteProfiles B3 DNA-binding domain profile. 449 550 IPR003340 GO:0003677
Bva11g00414 733 CDD B3_DNA 635 730 IPR003340 GO:0003677
Bva11g00414 733 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 566 731 - -
Bva11g00414 733 MobiDBLite consensus disorder prediction 281 299 - -
Bva11g00414 733 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 404 - -
Bva11g00414 733 Gene3D - 2 105 IPR015300 -
Bva11g00414 733 Pfam B3 DNA binding domain 649 731 IPR003340 GO:0003677
Bva11g00414 733 Pfam B3 DNA binding domain 449 548 IPR003340 GO:0003677
Bva11g00414 733 Pfam B3 DNA binding domain 20 103 IPR003340 GO:0003677
Bva11g00414 733 Pfam B3 DNA binding domain 314 402 IPR003340 GO:0003677
Bva11g00414 733 MobiDBLite consensus disorder prediction 176 299 - -
Bva11g00414 733 CDD B3_DNA 11 102 IPR003340 GO:0003677
Bva11g00414 733 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
Bva11g00414 733 MobiDBLite consensus disorder prediction 568 585 - -
Bva11g00414 733 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 416 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00414 Bva-Chr11 7933397 7937102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00414 445 730 B3 DNA Binding Superfamily AT3G18990 25.862 1.28e-21 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva11g00414 B3 8.9e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g00414 - - pavi:110753026 301.212