LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva11g00410	ATGATTGAAAGTAATATCATCATTGGAGTAATTGACACTGGAATTTGGCCAGAATCTCACAGCTTCGACGATAAAGGACTAGGTCCTCCTCCAAGTAAATGGAAGGGCAGTTGCCAAATCTCAGCCAATTTCACCTGCAATAACAAAATTGTTGGGgcaaaatattacaaaaccAATGGAACATTCAGACCAGAAGATCTTAAATCTCCTAGAGATTCAGATGGTCATGGCACACATGTAGCATCAACAGCAGCTGGAATGCCCGTCGGCATGGCAAGCATGTTAGGATTTGGACTGGGAACAGCAAGAGGAGCCGTTCCATCAGCACGAATTGCTGTCTATAAAGTCTGCTGGCCTCGCTGTGCTGATGCTGACATTCTCGCGGCATTTGATGATGCAATTGCAGATGGGGTTGATATATTATCAGTTTCACTTGGAGGCTCTGCTAATGagcaatattttgataattcagTAGCCATTGGAGCATTTCATGCTATGAGAAATGGAATACTGACAGTAACGTCAGCAGGAAATAAAGGTCCATCACCAGCAACACTATCAAATTTTTCACCATGGTCGATTTCTGTGGCAGCCAGCACCATGGATAGGAAGTTTGTCACCAAAGTTGAACTAGGTGACAACAAAACGTATGAGGGAGTTTCAATCAATACATTTGACCTTAAGGGAGATATGTATCCTCTAACCTATGGTGGAGATGCAGCAAATACCAGTGGAGGCAGCTCTTTGGCCAGGTTTTGCTTTCCCAACACATTGGACCCAAATTTGGTTAAGGGTAAAATTGTTCTTTGTGATGGAGATTTCAGCAGAATAGCAGCAACTAGCACCTTCTTGGCTGGTGCTGTTGGGGTGCTGACACAAGGTGAAACAAGAAGAGATTCTACTTCCATTTTTCCCTTGCCAGGATCTTACCTAAATTCGCATGATGGAGCTAATACGTCTATCTACCTAAATTCTACAAGAAACCCAACTGCAACCATATTCAGAAGCGAAGAGGTGAAAAATACATTGGCCCCGGCAGTGGTTTCTTTCTCATCGAGGGGTCCAAACCGTCTTACACCTGACATTCTGAAGccAGATTTGGTTGCTCCTGGAGTATATGTTCTAGCTAGTTGGTCAGAAATTTCTCCAATATCTAGAGTTGAAGGTGACAACAGGACATTaccatttaatataatttcaggAACATCAATGTCTTGCCCACATGTTTCTGGTGCAGCAGCATACGTTAAATCATTTCATCCTACATGGTCTCCAGCTGCTATCAAGTCAGCCCTAATGACTACAGCTAAGCCATTGAGCAGCAAGATTAACCATGAGGCAGAGTTTGCATATGGTGCTGGCCAAATTGATCCCATTAAGGCTGTGAATCCAGGTTTAGTATATGATGCTGGAGAGTCAGACTACATAAACCTTTTATGTGCACAGGGCTACACCACATGGCTTCTACGACGGGTCACAGGGGATAATAGCAGCTGTCCTGAAACAACAAATGCAACAGCAAGGGACCTAAACTACCCTTCCTTTGCTCTTCAAACCCAATTGGCAAAATCTACAAATGCTACTTTTAAGAGGACAGTTACAAATGTTGGCTCTTCAGTTTCAACCTATAAAGCAACTCTTACTGTTTCTTCTCAAGGACTAAAGATCCAAgtgaaccctagtgttctATCATTCACATCTCTAGGTCAAAAGCAGACATTTGAGCTCTCTATTGAAGGAACAATAGAAGAACCTATAGTTTCAGCTTCTTTGGTTTGGAATGATGGAAATTTCCAAGTGAGGAGCCCCATTATAGTGTATCACATAGAATG	1832	0.411	MIESNIIIGVIDTGIWPESHSFDDKGLGPPPSKWKGSCQISANFTCNNKIVGAKYYKTNGTFRPEDLKSPRDSDGHGTHVASTAAGMPVGMASMLGFGLGTARGAVPSARIAVYKVCWPRCADADILAAFDDAIADGVDILSVSLGGSANEQYFDNSVAIGAFHAMRNGILTVTSAGNKGPSPATLSNFSPWSISVAASTMDRKFVTKVELGDNKTYEGVSINTFDLKGDMYPLTYGGDAANTSGGSSLARFCFPNTLDPNLVKGKIVLCDGDFSRIAATSTFLAGAVGVLTQGETRRDSTSIFPLPGSYLNSHDGANTSIYLNSTRNPTATIFRSEEVKNTLAPAVVSFSSRGPNRLTPDILKPDLVAPGVYVLASWSEISPISRVEGDNRTLPFNIISGTSMSCPHVSGAAAYVKSFHPTWSPAAIKSALMTTAKPLSSKINHEAEFAYGAGQIDPIKAVNPGLVYDAGESDYINLLCAQGYTTWLLRRVTGDNSSCPETTNATARDLNYPSFALQTQLAKSTNATFKRTVTNVGSSVSTYKATLTVSSQGLKIQVNPSVLSFTSLGQKQTFELSIEGTIEEPIVSASLVWNDGNFQVRSPIIVYHIE	610

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva11g00410	610	ProSiteProfiles	Serine proteases, subtilase domain profile.	1	462	-	-
	Bva11g00410	610	CDD	Peptidases_S8_3	4	436	IPR034197	-
	Bva11g00410	610	Gene3D	Peptidase S8/S53 domain	5	475	IPR036852	GO:0004252\|GO:0006508
	Bva11g00410	610	SUPERFAMILY	Subtilisin-like	4	466	IPR036852	GO:0004252\|GO:0006508
	Bva11g00410	610	Pfam	Subtilase family	4	454	IPR000209	GO:0006508\|GO:0008236
	Bva11g00410	610	PRINTS	Subtilisin serine protease family (S8) signature	72	85	IPR015500	-
	Bva11g00410	610	PRINTS	Subtilisin serine protease family (S8) signature	3	22	IPR015500	-
	Bva11g00410	610	PRINTS	Subtilisin serine protease family (S8) signature	400	416	IPR015500	-
	Bva11g00410	610	Pfam	Fibronectin type-III domain	509	606	IPR041469	-
	Bva11g00410	610	Gene3D	-	479	609	-	-
	Bva11g00410	610	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	5	607	IPR045051	-
	Bva11g00410	610	Gene3D	-	202	340	-	-
	Bva11g00410	610	PANTHER	SUBTILISIN-LIKE SERINE PROTEASE	5	607	-	-
	Bva11g00410	610	ProSitePatterns	Serine proteases, subtilase family, serine active site.	401	411	IPR023828	-
	Bva11g00410	610	CDD	PA_subtilisin_like	209	333	-	-
	Bva11g00410	610	ProSitePatterns	Serine proteases, subtilase family, histidine active site.	76	86	IPR022398	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva11g00410	Bva-Chr11	7874349	7878375	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva11g00410	1	607	Subtilisin-like Serine Gene Family	AT3G46850	52.273	0.0	593

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva11g00410	-		-	gmx:100795826	832.402