Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00316 ATGAGCCCTAGCAGCCAGGTTAATGTTTCAGTGGGTCCAAGTAAATTTAATGATGCCAAACATGCAAGCATAAAGACTGTCTCCTCCGATACTTGCTTCTTGGTGTTTTCTGGGATTAATCTGAAAGCTTTCAAGAGACAAGAAAGCAGGGAAGACCATATATATACTTCAGATTTGCTCCTTTGTTTACTGAAAATCATGACGGCTGCTTCTCCGTCTGCGGCGGCAGCGCCGTTCTTCGGCGTCAGAGAGGAAATCCAGAGTCAGATGCCAAACCACCAATCTTCTACAGCTGCTTCCTCTACTGCTCCAAACACAGTACCTCAAAAGAAGAGGAGAAATCAACCTGGAAATCCAAATCCAGATGCAGAGGTAATAGCGCTATCTCCCAAGACCCTAATGGCAACAAACAGGTTCATATGTGAGGTTTGCAACAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTTCACAGAAGAGGACACAATCTGCCATGGAAGCTAAAGCAaaagaccaacaaagagccaaagaaaaaggtttaTCTGTGTCCTGAGCCCACATGCGTCCACCATGACCCTTCGAGAGCTCTCGGTGACCTCACAGGGATTAAGAAACACTATTCTCGAAAACATGGCGAGAAGAAATGGAAGTGTGAGAAATGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCAAAGACTTGTGGCACTAGAGAGTATAGATGTGACTGTGGCACTCTTTTCTCAAGGAGGGACAGTTTTATCACTCATAGGGCATTTTGTGATGCTCTAGCACAAGAAAGTGCAAGGCACCCTACCAACTTAAATGCCATGGGAACTCTACTATATAGCTCCAACCACATGACCTTAGGCTTATCCCAAGTTTCCCagcttcaaaatcaaaaccaagCAAACCCTAACAACATTTTGAGCCTTGGAGGAAGTGGGGCACCAAAATTTGAGCACTTAATTCCAACGTCAAATAACTCTAATTCATTTGGAGCAATTCCCACTTCAGCTTTCTTCTTGAGTGACCCAAATCAAACATTTCAAGATCAACAATCTCCACATGGGCAATTCTCAAGCAAGCAACTACAAAGCCTTATGCAACTTCCTCATCTCCAAGGCAACTCTAATAACCCCAACTCTTCTAATGCCAATCTATTCAACCTTAGCTTCTTCCCTAATAGTATTAACACTGCAAGCAGCATGATCCATGACCAATACAACAATGTGAGTAGTGGTGGCGGCGGCGGCGAAGGGACATCACTTTTCTCTAGTAACCCTAGTGATCAAGCTGGAACTGGTTTTCCCTCACTCTTCAGCAACCAAGTTCAACATGAAAGCATGTCATCCCCACATATGTCGGCAACCGCGCTGCTTCAGAAAGCTGCTCAAATGGGTTCAACCACCAGCACCAATAGCTCTTCTTTACTAAGAGGAATTGGTTGTTCCTCAAGCAATGGTGCCAAATCTGATAGGCAAGTTCTGGCCAATAACTTTGCCATTCTTGAAGGTGATAGTAGAGTAGAAGGTGTAAGATCAAGCATGGAAAAGGAGCAACATCATTTCAGAGGGCTAATGAATTCTCTTGCTGATGGTAAAACTTCCATTTATGGGAATGTGCAAGAGAACAACCATGGAAGATTTCACAACATTGATGAGTCATTTAAGTTGCACCAAAATCTGGGTGTAACCTTTGGAGGGTCTGATAAGTTAACGTTAGACTTTCTTGGTGTTGGAGGAATGGTGGGAAACATGAATGGTGGATTTTCTCAAAGAGACCAACGAcgacaacaacaacaacatgGGATCAATATGAGTTCTTTGGATTCAGAACCCAAGTCAACAGCACAAGCAAGCCAACCTTTTGGAAGTACAACGTTTTA 1895 0.4195 MSPSSQVNVSVGPSKFNDAKHASIKTVSSDTCFLVFSGINLKAFKRQESREDHIYTSDLLLCLLKIMTAASPSAAAAPFFGVREEIQSQMPNHQSSTAASSTAPNTVPQKKRRNQPGNPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKKKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTNLNAMGTLLYSSNHMTLGLSQVSQLQNQNQANPNNILSLGGSGAPKFEHLIPTSNNSNSFGAIPTSAFFLSDPNQTFQDQQSPHGQFSSKQLQSLMQLPHLQGNSNNPNSSNANLFNLSFFPNSINTASSMIHDQYNNVSSGGGGGEGTSLFSSNPSDQAGTGFPSLFSNQVQHESMSSPHMSATALLQKAAQMGSTTSTNSSSLLRGIGCSSSNGAKSDRQVLANNFAILEGDSRVEGVRSSMEKEQHHFRGLMNSLADGKTSIYGNVQENNHGRFHNIDESFKLHQNLGVTFGGSDKLTLDFLGVGGMVGNMNGGFSQRDQRRQQQQHGINMSSLDSEPKSTAQASQPFGSTTF 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00316 631 Pfam Zinc-finger double-stranded RNA-binding 139 161 IPR022755 -
Bva11g00316 631 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 74 598 - -
Bva11g00316 631 SMART c2h2final6 215 235 IPR013087 -
Bva11g00316 631 SMART c2h2final6 139 161 IPR013087 -
Bva11g00316 631 SMART c2h2final6 180 210 IPR013087 -
Bva11g00316 631 MobiDBLite consensus disorder prediction 88 116 - -
Bva11g00316 631 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 74 598 - -
Bva11g00316 631 MobiDBLite consensus disorder prediction 591 631 - -
Bva11g00316 631 SUPERFAMILY beta-beta-alpha zinc fingers 138 235 IPR036236 -
Bva11g00316 631 ProSitePatterns Zinc finger C2H2 type domain signature. 141 161 IPR013087 -
Bva11g00316 631 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 161 IPR013087 -
Bva11g00316 631 MobiDBLite consensus disorder prediction 413 442 - -
Bva11g00316 631 Gene3D Classic Zinc Finger 120 186 - -
Bva11g00316 631 MobiDBLite consensus disorder prediction 590 631 - -
Bva11g00316 631 Gene3D Classic Zinc Finger 193 272 - -
Bva11g00316 631 MobiDBLite consensus disorder prediction 88 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00316 Bva-Chr11 6981679 6986524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00316 79 591 IDZ Gene Family AT2G02070 47.170 2.94e-128 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva11g00316 zf-C2H2_jaz 3.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g00316 K25870 - tcc:18609936 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g00316 11 6981679 6986524 Bva11g00316 11 6981679 6986524 ECH