Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00250 ATGGGTTTCTATTCTCAATTAGTCTCTCACTTTGCCTTATTTATAATCCCTATACTGAtcagatttctttcttttcatgtaGAGTCATTCACTCCAAACATTACAACAGACAAAGAGGCCTTAATCTCATTCAAGTCCCAATTGAGTAATGATCCTCCTCACCCATTATCTTCCTGGGACCAGAACTCATCACCCTGCAATTGGACCGGTGTCTTCTGCAACAATCTTCATGATAACAGAGTTGTTGCCTTGAATCTTTCGGGTTTAGGACTCTCTGGTCACATAAGTGCTTATATTGGtaacctttcttttcttgattcaCTCCAACTCCAGAATAACCAATTGACAGGAGTCATTCCTGATCAAATTGGTAATCTGATTCGCTTGAGAGTTTTAAACATGAGCTCTAACAGAATTCAAGGGATACTTCCTTCTACCATCACTCACTTGACTGAGCTCCATGTGCTCGACTTATCTTCTAACAATATTATAAGTCAAATTCCTACAGATATTGACCTCTTGACAAAGCTTCAAGTTCTCAAATTGGGAAAGAATAACCTTTATGGTACTATCCCTCCATCTCTAGGAAATATTTCAACTCTCACAAACATCAGTTTTGGCACAAACAGTCTTAGTGGTATGATTCCAATCGATTTGGGTCGGCTCAAGAATCTTGTTGAGCTTGATCTCACAATCAACAATCTCACTGGGACTGTTCCGCCATCTTTATATAACTTATCTTCCCTCATTAACTTTGCCCTAGCTGCCAACGACTTGTGGGGTGAGTTTCCTGAGGATGTTGGTGATAGGCTTCCTAAGCTCCTCGTGTTCGATATGTGCATCAATAGATTCAAGGGTAGAATTCCTGGATCCTTGCACAATCTCACCAACATTAGAGTTATTAGAATGGGTCACAACTTACTGAATGGAACTGTACCACCAGGTCTAGGGAATCTCCCTTTCCTTCAAATGTATAATATACGATTTAATAAGATTGTCAGCTCAGGTGATAGAGGTCTTGAATTCCTTAGTGCTTTAACAAACAGTACACGGTTGCGCCGCCTTGCAATCGATGGCAATCAACTAGAAGGTGTAATTCCAGAGAAAATTGGCAATCTATCCAAGGTTCTGTCATTATTATACATGGGACAGAATAAAATCTATGGCACCATACCAGCCTCTATTGGTCAACTTAGTAGCTTGAGATTGTTAAATTTGAGCTTTAATTCCATCTCAGGAGGAATCCCATCCGAATTAGGCAAATTGCAGGAACTGCAAGAGCTTCATTTGGCTGGAAATCAGATATCAGGAAGTATTCCAAAATCCTTTAGTAGTCTCCGAAAGTTAATCCGAATTAATTTGTCAGGGAATGAAATTTCTGGTAAAATACCTGTTAGTTTTGGGAATTTTGAAAACCTTCTCTCACTGGACTTATCCAATAATAAGCTTAAGGGAAGAATACCCAAAGAAATACTCCATCTCTCAACTCTAAGCAGTGCTTTGAACTTGTCTAAGAACTTCTTAAGTGGATCCTTACCTGATGAAATTGGGAGTTTGGTTAGTGTTACTACTATGGACTTCTCCGACAACCACTTATCTGGCAAACTTCCTAGTTCAATCAAATACTGTTTGAGCTTGGAAACTCTATTCTTGGCCAGAAATATGTTTTCCGGATCCATTCCACAAATTCTTGCACAAGTAAGAGGTTTGGTAAATCTGGACCTATCCTCTAACAATTTCTCTGGCATCATTCCAGTAGAACTTGGAAACCTTAAGGCCCTTCAGTTCTTGAACCTCTCTTACAATGATTTAGAGGGAGAAATTCCCAGTGCTGGGGTTTTCCAGAATCTTTCTGCTGTCCATTTAGAAGGAAACAAGAAACTTTACATGACAGCTAAGATAGGAGACTTCGGATTGGCTAGGATGTTGATTGAAAGATCAAGTGATCAAGTCTCAATTAGCTCTACTCATGTTCTAAGAGGTTCAATTGGCTACATACCTCCAGAATATGGCTGGGGAGAAAAGCCATCAATAGCTGgagatatatatagttttggaaTTGTGTTGCTAGAGCTTTTCACTGGAAAAAGCCCAACAAACAATAGCTTCACAGGAGGCATAAATCTAACAAGCTGGGTAAAGTCTGCATTCCCACAAAAGGTTGAGCAAGTCATAGATCCTCAATTGCTAACATATGAAGATTCAGATGCTATTTATGATCATGTGAATGCAAAAAATCCAAATCTTCAACTTGATTGTCTGTCTACAATTCTTCAAGTTGGGCTATCCTGCACTGCGGATTTTCCACATGAACGCATTTGCATAAGGGATGTTGTTCGCAAATTGGAAGCTTCCAAAGAGATTCTGTTGAAGGCAGCCAAGATTCACTATGAAGTTTG 2399 0.3864 MGFYSQLVSHFALFIIPILIRFLSFHVESFTPNITTDKEALISFKSQLSNDPPHPLSSWDQNSSPCNWTGVFCNNLHDNRVVALNLSGLGLSGHISAYIGNLSFLDSLQLQNNQLTGVIPDQIGNLIRLRVLNMSSNRIQGILPSTITHLTELHVLDLSSNNIISQIPTDIDLLTKLQVLKLGKNNLYGTIPPSLGNISTLTNISFGTNSLSGMIPIDLGRLKNLVELDLTINNLTGTVPPSLYNLSSLINFALAANDLWGEFPEDVGDRLPKLLVFDMCINRFKGRIPGSLHNLTNIRVIRMGHNLLNGTVPPGLGNLPFLQMYNIRFNKIVSSGDRGLEFLSALTNSTRLRRLAIDGNQLEGVIPEKIGNLSKVLSLLYMGQNKIYGTIPASIGQLSSLRLLNLSFNSISGGIPSELGKLQELQELHLAGNQISGSIPKSFSSLRKLIRINLSGNEISGKIPVSFGNFENLLSLDLSNNKLKGRIPKEILHLSTLSSALNLSKNFLSGSLPDEIGSLVSVTTMDFSDNHLSGKLPSSIKYCLSLETLFLARNMFSGSIPQILAQVRGLVNLDLSSNNFSGIIPVELGNLKALQFLNLSYNDLEGEIPSAGVFQNLSAVHLEGNKKLYMTAKIGDFGLARMLIERSSDQVSISSTHVLRGSIGYIPPEYGWGEKPSIAGDIYSFGIVLLELFTGKSPTNNSFTGGINLTSWVKSAFPQKVEQVIDPQLLTYEDSDAIYDHVNAKNPNLQLDCLSTILQVGLSCTADFPHERICIRDVVRKLEASKEILLKAAKIHYEV 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00250 799 SMART LRR_sd22_2 174 200 - -
Bva11g00250 799 SMART LRR_sd22_2 422 448 - -
Bva11g00250 799 SMART LRR_sd22_2 150 169 - -
Bva11g00250 799 SMART LRR_sd22_2 349 375 - -
Bva11g00250 799 SMART LRR_sd22_2 222 248 - -
Bva11g00250 799 ProSiteProfiles Leucine-rich repeat profile. 152 174 IPR001611 GO:0005515
Bva11g00250 799 SUPERFAMILY L domain-like 57 379 - -
Bva11g00250 799 Gene3D Transferase(Phosphotransferase) domain 1 630 798 - -
Bva11g00250 799 Gene3D Ribonuclease Inhibitor 270 337 IPR032675 -
Bva11g00250 799 ProSiteProfiles Protein kinase domain profile. 425 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva11g00250 799 PANTHER OS04G0122200 PROTEIN 630 787 - -
Bva11g00250 799 PANTHER OS04G0122200 PROTEIN 23 628 - -
Bva11g00250 799 SUPERFAMILY L domain-like 376 628 - -
Bva11g00250 799 Pfam Protein tyrosine and serine/threonine kinase 631 780 IPR001245 GO:0004672|GO:0006468
Bva11g00250 799 SUPERFAMILY Protein kinase-like (PK-like) 630 780 IPR011009 -
Bva11g00250 799 Gene3D Ribonuclease Inhibitor 338 629 IPR032675 -
Bva11g00250 799 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 23 628 - -
Bva11g00250 799 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Bva11g00250 799 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 630 787 - -
Bva11g00250 799 SMART LRR_typ_2 174 198 IPR003591 -
Bva11g00250 799 SMART LRR_typ_2 422 445 IPR003591 -
Bva11g00250 799 SMART LRR_typ_2 222 246 IPR003591 -
Bva11g00250 799 SMART LRR_typ_2 446 469 IPR003591 -
Bva11g00250 799 SMART LRR_typ_2 295 319 IPR003591 -
Bva11g00250 799 SMART LRR_typ_2 126 149 IPR003591 -
Bva11g00250 799 SMART LRR_typ_2 150 173 IPR003591 -
Bva11g00250 799 SMART LRR_typ_2 567 590 IPR003591 -
Bva11g00250 799 SMART LRR_typ_2 591 616 IPR003591 -
Bva11g00250 799 SMART LRR_typ_2 398 421 IPR003591 -
Bva11g00250 799 SMART LRR_typ_2 470 494 IPR003591 -
Bva11g00250 799 SMART LRR_typ_2 102 125 IPR003591 -
Bva11g00250 799 Gene3D Ribonuclease Inhibitor 33 184 IPR032675 -
Bva11g00250 799 Gene3D Ribonuclease Inhibitor 185 269 IPR032675 -
Bva11g00250 799 PRINTS Leucine-rich repeat signature 473 486 - -
Bva11g00250 799 PRINTS Leucine-rich repeat signature 591 604 - -
Bva11g00250 799 Pfam Leucine rich repeat 351 411 IPR001611 GO:0005515
Bva11g00250 799 Pfam Leucine rich repeat 105 163 IPR001611 GO:0005515
Bva11g00250 799 Pfam Leucine rich repeat 545 604 IPR001611 GO:0005515
Bva11g00250 799 Pfam Leucine rich repeat 424 483 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00250 Bva-Chr11 5937423 5941186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00250 91 782 Receptor kinase-like Gene Family AT5G20480 29.076 3.31e-53 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Bva11g00250 PK_Tyr_Ser-Thr 3.4e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g00250 - - gmx:100783512 821.231