Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00125 ATGCTTAATTGGGTTCTTTTGGCGATTTTCCTGCTCTGCGTTGGCATGAGTGGCGTCATCATTGTCTACATGTGTCTTCTCTGGTATTCCACTACCCTCCAATCCAACGTTGTGCTGCCGGTGACATCCACTTCTGAGAAAGGCTTGTCGTCGTCGGAGCTCGATAAGTTACCCAAAATCGCCGGTAAAGAATTGGTGATGGGCACTGAATGTGCCATCTGCCTTGACGAGATTGAGAAGGAGCAACCGGCTCGACTGGTTCCTGGTTGCAACCACGCATTCCATATAGAATGCATTAACACTTGGCTTTCGAAGCATCCGCTGTGTCCGCTTTGTCGAGCCAAGCTTGATCCTGAATTTTTCAGTTCATCTCAAAATCCATGCTA 386 0.4819 MLNWVLLAIFLLCVGMSGVIIVYMCLLWYSTTLQSNVVLPVTSTSEKGLSSSELDKLPKIAGKELVMGTECAICLDEIEKEQPARLVPGCNHAFHIECINTWLSKHPLCPLCRAKLDPEFFSSSQNPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00125 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Bva11g00125 128 Pfam Ring finger domain 70 113 IPR001841 -
Bva11g00125 128 SUPERFAMILY RING/U-box 70 118 - -
Bva11g00125 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 128 - -
Bva11g00125 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 119 IPR013083 -
Bva11g00125 128 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 128 - -
Bva11g00125 128 SMART ring_2 71 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00125 Bva-Chr11 3464877 3465263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00125 1 128 C3H Transcription Factor Family AT5G42200 47.059 4.77e-37 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g00125 K19037 - gmx:100817919 201.06