Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00100 ATGTCTAACTCTGACGGGACTGCCACTAACGGCGTTAGTAACGGCTCCATGGTTGACCCACAGAGACAGCCGTCAGCCGGTAACGGTGCTCTAGCCGTCAAGAAGCCGCCGTCAAAGGATCGTCATAGCAAGGTGGACGGTCGTGGACGCCGTATACGTATGCCGATCATTTGCGCCGCACGTGTATTCCAGCTCACACGTGAGTTGGGTCACAAATCCGACGGTCAAACCATCGAGTGGTTGCTCCGGCAAGCTGAGCCGTCTATTATAGCGGCCACCGGCACTGGCACAACTCCGGCTAGCTTCTCCGCAGTCTCAGTCTCGGTTCGTGGTGGTGGAGGAAGTATTTCTAGCTCACTATCCTCGTCTTCTACTAATTCTACTTCTCTGGACCACAAGCCCCTCATGGGTATAACACCCTTCATACTCGGCAAGCGTATTAGGACCGATGATGACGCCGCCAAGGATGATGGTGTCTCTGCGGGACTCACTGTGGGGTCTATAGTGGGACCTACTACCCCACCCGGGTTGTGGGCCCTTCCGGCGAGGCCGGACTTTGGACAGGTATGGAGTTTCGCCGCTGCTCCGCCGGAAATGGTGGTGCAGCAGGCAGCAGTATCGGTGTCTCAGCAGCAGCAGGCTTCATTATTCGTTCATCATCAGCAGCAAGCCATGGGAGAGGCGTCGGCGGCGAGACTGGGAAATTACCTTCCAGGACATCTGAATTTGCTAGCTTCATTGTCGGGTGGGCCTGGAAATTCAGGCAGGAGAGATGACGAGCATCGTTG 788 0.5609 MSNSDGTATNGVSNGSMVDPQRQPSAGNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSAVSVSVRGGGGSISSSLSSSSTNSTSLDHKPLMGITPFILGKRIRTDDDAAKDDGVSAGLTVGSIVGPTTPPGLWALPARPDFGQVWSFAAAPPEMVVQQAAVSVSQQQQASLFVHHQQQAMGEASAARLGNYLPGHLNLLASLSGGPGNSGRRDDEHR 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00100 262 ProSiteProfiles TCP domain profile. 38 92 IPR017887 -
Bva11g00100 262 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 259 IPR005333 GO:0003700
Bva11g00100 262 Pfam TCP family transcription factor 38 123 IPR017887 -
Bva11g00100 262 MobiDBLite consensus disorder prediction 35 50 - -
Bva11g00100 262 MobiDBLite consensus disorder prediction 1 23 - -
Bva11g00100 262 MobiDBLite consensus disorder prediction 1 50 - -
Bva11g00100 262 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00100 Bva-Chr11 3169568 3171511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00100 13 262 TCP Transcription Factor Family AT5G23280 65.759 4.48e-100 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Bva11g00100 TCP 6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g00100 K16221 - cpap:110813909 353.984