Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00071 ATGGAGTGTATAGACATTAGTTCATCTGATGATGATCTTGAAGAGATAGATGGTTCAAATTATAGGAGCCTTCCAGAATGGGCTGGTACTGGAAGCAATGCTGGTTATGATGGATGGTCTAAGCGGGGTAGCTCTTCTAGAAGGGAAAATACTTCAAATGTGAGCTCTTCAAGTGTTAACAACCTTTCACAAGCCAAGCCCCATACTCAACCTGGGTCTAGCAATTATACGCTGAGCCATGGAATTGCACGTGCAAATGAGTCTTTGTATTTTAGGGAGAATGGAAATCATACAGTTAATTCCCGAATTGCTAATACTCCAAGGCTGCATTCATCTCCTGTTCAGTTATTTGCACCAGATACCAGATTTAGCAACTTGAAAAGTAACCGAAGTAGCAGTTGGATTGAGGATACTTATGGAAACCCTCATCATGTAGGAGGATCTGGTATGACAAATGACAAGGGCTACATGCGTGAATATTACAGTAGGATTAGAAATGAAGAACATGCCATGCTTCAAAATGGTGTGAGTAGGATTCATCCTCTGTCTTTGATGCACAGAAAGGCCACATCGTCTACACTATTGGCCAGTTTGAGTGAATCTACATTTTGTGCTGGGGCAGGTGAAGGGAGGGCTTCTGTAAATGATGAGAGACTGATTTATCAGGCAGCTTTAGAGGAGGGAGCTCCTTTGAGAGTCTCTTGGAACGTTAAGAGTGTTGATGATTCTATAGGATATGAgGATCTCAATCAACCAAAAGTTGAAGCTACTTTACCTGATGGTCTGTTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGACATGGATGCTTCAGAGGGAAACCAGAAGTTTGCATTGTTTGGGTGGGATTTTGGCTGATGATCAaGGCCTTGGAAAGACAGTTTCAATGATTGCCCTCATACAAATGCAGATGTCGTCGCagtcaaaatcaaaaactgATGATAGTTGCATTCAAAAAGCTGTAGCATTAAAtttggatgatgatgatgatgatgatgtggaaaaattaaaaaatgaagagtCTGATATTAAAAATCCTATTCCCGAATCTAGTAGTTTGTCAAGGGTGCTAAATAGGAAAAGGCCAGCTGGTGGTACATTGGTTGTTTGCCCTGCTAGTGTTCTTCGTCAATGGGCCCAGGAGCTTGAAGACAAAGTTGACAGTGGAGCTAAGCTTTCTGTATTGATTTATCACGGGGGCAGTAGGACAAAGAATCCTGTGGAACTCGCTGAACATGATGTGGTTCTTACTACATACTCGATTGTGACCATTGAAGTTCCAAAGCAACCTCTAATTGAAGAGGATGAAATTGATGAAAGAGATGGTGAAAAGTTTGGATTATCTTCTGAGTTTTCTCTTAgcaaaaagaggaagaagacatATAATGCAAATAAGAAGAGTAAAAAGGGTAAAAGAGGATTAGACAATTCTTCTATCGATTGTGCTTCTGGAACTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTCGCGCCAAAAGAAGGTGGTGCTTATCAGGAACACCTATTCAAAATGCTATTGATGATCTGTATAGCTACTTCAGGTTCCTGAAGTATGATCCTTATGCAGTATATAAATCCTTCTACAATACAATAAAGGTTCCAATATCTAAAAATTCTATCCAGGGTTACAAGAAGCTTCAAGCAGTTCTGAGGGCCATTATGCTACGTCGGACCAAAGGAACCTTTATCAATGGGGAGCCAATAATTCAGTTACCCCCTAAAACAATCCGGCTGAACAaagttgatttttcatttgaggAGAGAGCCTTCTACAAAAAGTTGGAAGCAGATTCACGTTCTCAATTTAAGGAATATGCTGCGGCTGGTACAGTGAATCAGAACTATGCAAATATTCTTCTGATGCTTTTACGTCTCCGTCAGGCTTGTGATCACCCACGTCTTGTTAAAGATTATGATTCTGACCCAGTTGGGAAAAATTCTGTAGAAATGGCTCATAGGCTTCCAAGGGATATGCTGATTAATCTTTTCAGTTGTTTGGAAACTACCTTTGCAATAATATGTCAAGTTTGCAATGATCCGCCTGAAGATGCTGTTGTTACTATGTGCGGTCATGTCTTTTGTTATCAATGCATATCAGAATATTTGACCGGCGACGATAACACATGTCCTGCAATTAATTGTAAAGAACAAATTGGTGATGATGTTGTTTTCTCCAGAGCTACTTTAAGAAGCTGCATCTCTGATGACCATGGCGGCAGTAGTTCGGGAGATTCTCATCTTGTTGACTATTCAGTAGTACAGCAGAATGAGTACAGCTCATCTAAAATCAAAGCTGTCCTTGAGATTCTGCaatcaaattgtaaaatgaagAGTCCAGGTTCTGGACTACCGAGTTCCTCCGGATGTAGAGATTCATTGTCTCCTGATGATTCATGTATTGAAGATTGCCATTCAGATGTTACAGTTACAAAACATACAAGAAAATATTCAGACTCAACAAACGAAGGACCTataaagtatattattttctccCAGTGGACTAGCATGTTGGACTTAGTTGAGATATCACTGAATCAGTCTTGTATACAGTACAGGAGACTCGACGGTACAATGACTCTGTCTTCTAGGGACAAAGCTGTCAAAGATTTCAATACTGATCCTCAGGTCACTGTTATGCTGATGTCTCTAAAAGCAGGAAACCTTGGTTTGAACTTGGTTGCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCGACGACCGAAGATCAAGCCGTCGATCGAGCTCATAGAATTGGACAGACCCGTCCGGTGACTGTAACGCGGATCACTATAAAAGACACTGTCGAGGATAGAATACTGGCTCTCCAGgaagaaaagagaaaaatggttGCATCTGCATTTGGTGAAGACCAAGCTGGGGGTACCGCAACTCGGCTTACAGTAGATGATCTGAATTATCTTTTCATGGTCTA 3047 0.3902 MECIDISSSDDDLEEIDGSNYRSLPEWAGTGSNAGYDGWSKRGSSSRRENTSNVSSSSVNNLSQAKPHTQPGSSNYTLSHGIARANESLYFRENGNHTVNSRIANTPRLHSSPVQLFAPDTRFSNLKSNRSSSWIEDTYGNPHHVGGSGMTNDKGYMREYYSRIRNEEHAMLQNGVSRIHPLSLMHRKATSSTLLASLSESTFCAGAGEGRASVNDERLIYQAALEDLNQPKVEATLPDGLLSVSLLRHQKIALTWMLQRETRSLHCLGGILADDQGLGKTVSMIALIQMQMSSQSKSKTDDSCIQKAVALNLDDDDDDDVEKLKNEESDIKNPIPESSSLSRVLNRKRPAGGTLVVCPASVLRQWAQELEDKVDSGAKLSVLIYHGGSRTKNPVELAEHDVVLTTYSIVTIEVPKQPLIEEDEIDERDGEKFGLSSEFSLSKKRKKTYNANKKSKKGKRGLDNSSIDCASGTLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNAIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISKNSIQGYKKLQAVLRAIMLRRTKGTFINGEPIIQLPPKTIRLNKVDFSFEERAFYKKLEADSRSQFKEYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDYDSDPVGKNSVEMAHRLPRDMLINLFSCLETTFAIICQVCNDPPEDAVVTMCGHVFCYQCISEYLTGDDNTCPAINCKEQIGDDVVFSRATLRSCISDDHGGSSSGDSHLVDYSVVQQNEYSSSKIKAVLEILQSNCKMKSPGSGLPSSSGCRDSLSPDDSCIEDCHSDVTVTKHTRKYSDSTNEGPIKYIIFSQWTSMLDLVEISLNQSCIQYRRLDGTMTLSSRDKAVKDFNTDPQVTVMLMSLKAGNLGLNLVAACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRITIKDTVEDRILALQEEKRKMVASAFGEDQAGGTATRLTVDDLNYLFMV 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00071 994 SMART helicmild6 853 936 IPR001650 -
Bva11g00071 994 SMART ring_2 689 727 IPR001841 -
Bva11g00071 994 CDD DEXDc_SHPRH-like 246 572 - -
Bva11g00071 994 ProSitePatterns Zinc finger RING-type signature. 704 713 IPR017907 -
Bva11g00071 994 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 681 739 IPR013083 -
Bva11g00071 994 Gene3D - 587 993 IPR027417 -
Bva11g00071 994 MobiDBLite consensus disorder prediction 37 78 - -
Bva11g00071 994 Gene3D - 218 312 IPR038718 -
Bva11g00071 994 Gene3D - 436 583 IPR038718 -
Bva11g00071 994 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 580 992 IPR027417 -
Bva11g00071 994 CDD SF2_C_SNF 837 945 - -
Bva11g00071 994 Pfam Helicase conserved C-terminal domain 840 936 IPR001650 -
Bva11g00071 994 SMART ultradead3 242 551 IPR014001 -
Bva11g00071 994 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 46 993 - -
Bva11g00071 994 MobiDBLite consensus disorder prediction 1 78 - -
Bva11g00071 994 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 46 993 - -
Bva11g00071 994 SUPERFAMILY RING/U-box 687 735 - -
Bva11g00071 994 Pfam Zinc finger, C3HC4 type (RING finger) 689 725 - -
Bva11g00071 994 Gene3D - 337 426 IPR038718 -
Bva11g00071 994 ProSiteProfiles Zinc finger RING-type profile. 689 728 IPR001841 -
Bva11g00071 994 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 572 IPR027417 -
Bva11g00071 994 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 823 989 IPR001650 -
Bva11g00071 994 MobiDBLite consensus disorder prediction 316 344 - -
Bva11g00071 994 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 261 534 IPR014001 -
Bva11g00071 994 Pfam SNF2-related domain 249 650 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00071 Bva-Chr11 2791319 2807680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00071 3 894 RAD5 or RAD16-like Gene Family AT1G50410 55.543 0.0 889
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva11g00071 SNF2_N 1.4e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g00071 - - gmx:100795142 1335.47