Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g00013 ATGGCGCATTCTTGGAAGCGCATTCCCGACCCAAAGGTTGATGCCTTGAGCGATCGTGTACGTGACCTGCTGAGTTGCGGAGCTAACAAGCCGGATAGTCGAGAAGTTAATCTGGGTTCACCGGTTTTGACATTGCAGACTCGGACACGTCAGAGTGCACCAACTGCCAGTGGGCTAACCTCCACCACTACTAGTAGTAGTAGTTCCAGCTCATCAAGATCAGTCACTGTGCGAAGTAACCCTGTTTCAAAAAAATACGATTCTGGGTGGAAAAACCAATCCAGCGAGAACAGTTCCATTGCCGCAAAGAGTCCACGATCTTCGGGGAGTGCAAGGAAACCTAGAACGGTTCAAGCAAGATCAGATTCAGGGAACACCCaacctttaaaatatttaggtCAAAGCTCCGTGAATTCACCGCCACGCATTGTCCTTCCCGCCGGTAATATCTGCCCTTCGGGAAAGATTGGCAAGACGGGCATGGCTTCCAATCAAAGTTCAAGGACTGACGTTTTGGGCTCAAGTACGGGAATTTACGGTTATGGAAGCATAATGCGGGGCGGTACCACAGCTAGAGGGTATGTTGGAGACACCACGGGTGTTGTAAATGCGAAGACAATGAGTGGTGGTAGTGTCAATGACACAGTGAAGAGAGCAATGCAAAGTGTGGATCCAGAAGAGTTGAACATAGCAGGGAATGAGCATTGCAAAAAGGGGCAATTTATAGTGGCATTGAGTCTATATGATCAGGCCATTGCACTGTCTCCGACAAATGCTGCCTACTGGAGTAACCGAGCAGCAACATTGGCGGGTTTAGGAAGAATGGCTGAGGCAGTTAGGGAATGTGAGGAGGCCGTGAGGTTGGATCCTTATTACCTAAGGGCTCATCAACGTTTGGCATCTCTTTTTATTAGGTTAGGACACCTTGAGAATGCTAGGAAGCACCTTTTTCATCAGGGGCTAAGTCCGGATCCATCTGAGTTGCAGAAGTTGGAATTAGTAGAGAAGCATGTCAGCAGATGTACGGATGTCCGAAGGAGAGGTGATTGGATATGTGTTCTTAGGGAAATTGATGCTGCTATTGCTGCTGGGGCTGACTCTTCTCCTCATCTCTTAATGTGTAGAGCGGAAGCTCTTTTAAAGCTACACCGAACTGATGATGCGGAATCAAGTCTGTTAAATATATCACAACTGGAAACACCTACTAATTCCTcttcaacaaaatattttgggaTGTTTTTTGAAGCATATTCCTTCTTTGTCCGAGCTAAGATTGACTTGGCTCTAGGAAGGATTGAGAATGCAATCACAGCTGCTGAGAAAGCTGTGAAAATTGAGCCACGTAATGTTGAAGTTGTTTTTTTGCACAACAATGTAAAAATGGTGGCTAGAGCTCGAGCACGCGGCAATGATCTTTTCAAATCTAAAAGATATAATGAAGCTTGCTCAGCATATGGGGAAGGATTGAAGGTGGACACTTCAAATTCTGTTCTTTATTGCAATAGAGCAGCTTGTTGGTTTAAAGCTGGGCAATGGGAAAAATCAATTGAAGACTGTAATCATGCTTTACATTTCCGACCAAACTATACAAAAGCCCTTCTTCGAAGAGCTACTGCAAACAGCAAGCTAGAAAGATGGGTAGAAGCAGTCAAAGATTATGAGATTTTGCGGAGAAAACTTCTAGATGACAAAGAAGTTGCTGAAGCTCTCTTTCATGCACAAGTGGCATTAAAGAAATCTCGCGGGGAAGAAGttcataatttgaaatttggtgGTGATGTAGAAGTAGTATCAGGGCTTGATCAATTTAGAGATGCAATATCTTTACCAGGTGTTTTTGTTGTCTATTTTGAAATTGCACCTGACACCCAGTGCAAGCAAATATCATCGTTTGTGGATACTCTATGTCACCGGTATCCGTCTATCAACTTCCTCAGGGTGAATATCCAAGAGTGTCCAGCAGTTGCCACAGCTGAGAATGTCCACATTGTACCAACATTTAAGATCTATAAAAACGGGAGTCGAGTAAAGGAAATAATATGCCCCAGCCGTGATATGTTGGAACATTCTGTGAGGCATTACAGCATTTTGAACCCTTG 2099 0.435 MAHSWKRIPDPKVDALSDRVRDLLSCGANKPDSREVNLGSPVLTLQTRTRQSAPTASGLTSTTTSSSSSSSSRSVTVRSNPVSKKYDSGWKNQSSENSSIAAKSPRSSGSARKPRTVQARSDSGNTQPLKYLGQSSVNSPPRIVLPAGNICPSGKIGKTGMASNQSSRTDVLGSSTGIYGYGSIMRGGTTARGYVGDTTGVVNAKTMSGGSVNDTVKRAMQSVDPEELNIAGNEHCKKGQFIVALSLYDQAIALSPTNAAYWSNRAATLAGLGRMAEAVRECEEAVRLDPYYLRAHQRLASLFIRLGHLENARKHLFHQGLSPDPSELQKLELVEKHVSRCTDVRRRGDWICVLREIDAAIAAGADSSPHLLMCRAEALLKLHRTDDAESSLLNISQLETPTNSSSTKYFGMFFEAYSFFVRAKIDLALGRIENAITAAEKAVKIEPRNVEVVFLHNNVKMVARARARGNDLFKSKRYNEACSAYGEGLKVDTSNSVLYCNRAACWFKAGQWEKSIEDCNHALHFRPNYTKALLRRATANSKLERWVEAVKDYEILRRKLLDDKEVAEALFHAQVALKKSRGEEVHNLKFGGDVEVVSGLDQFRDAISLPGVFVVYFEIAPDTQCKQISSFVDTLCHRYPSINFLRVNIQECPAVATAENVHIVPTFKIYKNGSRVKEIICPSRDMLEHSVRHYSILNP 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g00013 699 Pfam Tetratricopeptide repeat 233 291 - -
Bva11g00013 699 SMART tpr_5 416 449 IPR019734 GO:0005515
Bva11g00013 699 SMART tpr_5 530 563 IPR019734 GO:0005515
Bva11g00013 699 SMART tpr_5 259 292 IPR019734 GO:0005515
Bva11g00013 699 SMART tpr_5 369 402 IPR019734 GO:0005515
Bva11g00013 699 SMART tpr_5 496 529 IPR019734 GO:0005515
Bva11g00013 699 SMART tpr_5 225 258 IPR019734 GO:0005515
Bva11g00013 699 SMART tpr_5 462 495 IPR019734 GO:0005515
Bva11g00013 699 Pfam Thioredoxin 603 684 IPR013766 -
Bva11g00013 699 SUPERFAMILY TPR-like 225 452 IPR011990 GO:0005515
Bva11g00013 699 Pfam Tetratricopeptide repeat 419 448 IPR019734 GO:0005515
Bva11g00013 699 MobiDBLite consensus disorder prediction 26 145 - -
Bva11g00013 699 Gene3D Tetratricopeptide repeat domain 223 582 IPR011990 GO:0005515
Bva11g00013 699 CDD TRX_family 601 688 - -
Bva11g00013 699 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 15 694 - -
Bva11g00013 699 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 15 694 IPR044534 -
Bva11g00013 699 ProSiteProfiles TPR repeat profile. 225 258 IPR019734 GO:0005515
Bva11g00013 699 SUPERFAMILY TPR-like 462 579 IPR011990 GO:0005515
Bva11g00013 699 MobiDBLite consensus disorder prediction 39 142 - -
Bva11g00013 699 Gene3D Glutaredoxin 589 695 - -
Bva11g00013 699 ProSiteProfiles TPR repeat profile. 416 449 IPR019734 GO:0005515
Bva11g00013 699 SUPERFAMILY Thioredoxin-like 597 681 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g00013 Bva-Chr11 1913582 1917653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g00013 461 532 U-box Gene Family AT3G07370 34.722 7.18e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g00013 - - cpap:110810940 835.869