Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g02162 ATGACCAAGCTTCTGCTTTACCAATCTTGCCTTTTCTCTCAGGAGACTCTGCATAACATGGCTAGGGGGAAGAAGAAACACTTGAAGAGGCTGAATGCCCCGAAGCACTGGATGCTTGATAAGCTTGGGGGTGCTTTTGCTCCAAAGCCATCTCCTGGACCTCATAAGCAAAGGGAGTGTTTGCCACTGGTCCTTATTCTGAGAAACAAGCTCAAATATGCACTGGCATACCGTGAGGTCATCTCCGTTCTGATGCAGCGACATGTTCTGGTTGATGGAAAAGTTAGAACTGATCAGAAATACCCTGCTGGATTTATGGATGTTGTATCTATTCCCAAAGCAAACGAGAACTTCCGACTGCTTTATGATGTAAAAGGCCGTTTTCGCCTGCGCTCCATAACAGAAAATGAGGCAAAgTTCAAGTTATGTAAGGTACGTTCAGTGCAGTTCGGGAAAAGAGGAATCCCTTATCTGAACACTTACGATGGGAGAACTATAAGATACCCTGACCCTCTTATCAAAGCCAATGACtccataaaaattgattttgagaagaacaagatcacTGATTTCATTAAGTTTGAAGTTGGAAATGTAGCAATGGTGACCGGTGGGAGAAACCGGGGACGAGTTGGAATCATCAAGTGGAAGGAAAAGCATATGGGCACCTTTGACACCATCCACGTACAAGATGCTGTTGGACACGAGTTTGCAACTCGTTTAGAAAACGTTTTCATTATTGGGCAGGGATCAAAACCATGGGTGTCTCTGCCAAAAGGCAAGGGTATCAGGTTGAGTATCATTGAAGAGCAAAGGTTGAGACGTGAGACAGAAATGTTGGCTTCCTCTGCATG 854 0.4321 MTKLLLYQSCLFSQETLHNMARGKKKHLKRLNAPKHWMLDKLGGAFAPKPSPGPHKQRECLPLVLILRNKLKYALAYREVISVLMQRHVLVDGKVRTDQKYPAGFMDVVSIPKANENFRLLYDVKGRFRLRSITENEAKFKLCKVRSVQFGKRGIPYLNTYDGRTIRYPDPLIKANDSIKIDFEKNKITDFIKFEVGNVAMVTGGRNRGRVGIIKWKEKHMGTFDTIHVQDAVGHEFATRLENVFIIGQGSKPWVSLPKGKGIRLSIIEEQRLRRETEMLASSA 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g02162 284 Hamap 30S ribosomal protein S4e [rps4e]. 26 257 IPR000876 GO:0003735|GO:0005840|GO:0006412
Bva10g02162 284 Pfam S4 domain 69 109 IPR002942 GO:0003723
Bva10g02162 284 ProSitePatterns Ribosomal protein S4e signature. 27 41 IPR018199 -
Bva10g02162 284 Gene3D - 20 136 IPR036986 GO:0003723
Bva10g02162 284 Pfam 40S ribosomal protein S4 C-terminus 231 276 IPR032277 -
Bva10g02162 284 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 240 274 IPR000876 GO:0003735|GO:0005840|GO:0006412
Bva10g02162 284 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 21 240 IPR000876 GO:0003735|GO:0005840|GO:0006412
Bva10g02162 284 PIRSF RPS4a_RPS4e 20 260 IPR000876 GO:0003735|GO:0005840|GO:0006412
Bva10g02162 284 SMART s4_6 61 125 IPR002942 GO:0003723
Bva10g02162 284 CDD KOW_RPS4 194 248 IPR041982 -
Bva10g02162 284 Pfam Ribosomal family S4e 115 188 IPR013845 -
Bva10g02162 284 Gene3D - 141 191 IPR038237 -
Bva10g02162 284 ProSiteProfiles S4 RNA-binding domain profile. 78 124 - -
Bva10g02162 284 PANTHER 40S RIBOSOMAL PROTEIN S4 240 274 - -
Bva10g02162 284 PANTHER 40S RIBOSOMAL PROTEIN S4 21 240 - -
Bva10g02162 284 CDD S4 78 131 - -
Bva10g02162 284 Gene3D - 194 264 IPR014722 -
Bva10g02162 284 Pfam RS4NT (NUC023) domain 22 58 IPR013843 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g02162 Bva-Chr10 16324749 16326358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g02162 20 281 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 79.771 1.07e-162 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g02162 K02987 - aof:109843017 454.521