Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g02113 ATGGCACTGTTGTTGAGTGCCAGTGATGCGGGTCGAATTGGTCATCTAGTTCTCCCAAAAGCATGTGCAGAAGTTTATTTCCCTCCTATTTCTCAATCAGAAGGTCTTCCTTTGCAAATTCAAGATGGGGAGGGGAATGAATGGACGTTTCAGTTTAGATTTTTGCCTAATAACAATAGCAGGATGTATGTCTCGGAGGGTGTGACCCCTTGCATACAATCCATGGAATTACAGGCTGGTGATACtgatttgatttatgtttGCACTTA 269 0.4126 MALLLSASDAGRIGHLVLPKACAEVYFPPISQSEGLPLQIQDGEGNEWTFQFRFLPNNNSRMYVSEGVTPCIQSMELQAGDTDLIYVCT 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g02113 89 ProSiteProfiles B3 DNA-binding domain profile. 1 89 IPR003340 GO:0003677
Bva10g02113 89 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 4 82 - -
Bva10g02113 89 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 82 - -
Bva10g02113 89 CDD B3_DNA 5 82 IPR003340 GO:0003677
Bva10g02113 89 Pfam B3 DNA binding domain 5 82 IPR003340 GO:0003677
Bva10g02113 89 SUPERFAMILY DNA-binding pseudobarrel domain 4 82 IPR015300 -
Bva10g02113 89 Gene3D - 2 89 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g02113 Bva-Chr10 15139458 15139846 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g02113 5 82 B3 DNA Binding Superfamily AT2G30470 85.897 4.51e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bva10g02113 B3 2.3e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g02113 - - jre:109002417 146.362