Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g02092 ATGGTTAGCGAATCTGAATCACCCAACAAGCCAATGACTCCATTGAACCAAATGCTTCAGAATGTTTTCTCAGACAATAGCAACATCATGCTTGCAGCTATCATTTCTCTGCTTCTGGTCATTCTCTTCGTGCTTCTTCTTCACGTCTATGCCAAATGGTTCTTGGCTCAGGCACAAGGGCAAGCACTAGCTAGCCGCCGCCGTCGCCGGAGGTCGGTGACCGTCTCTGACGTTCTGGGTCCTTCCCGGTTCCACCATTTCACCATTGAAGACGCATCCATTTCGAGTTCCCCAACCAAAGGGCTTGATTCTGTGATCGTTGCCGCGATTCCACTTTTCCTTTACGAAGAAAcagaggaaaaagagaaacagagcAGGGATGAGCACGAATTGGAGTGTGTTATTTGCTTGAGTTCATttgaaaatggagaaattGGGAGGTGTTTACCCAAATGCAGGCACTGTTTTCATGTGGAATGCATAGACATGTGGCTGGGTTCACATTCAAATTGCCCAATTTGCAGAGCTCCAATTGTAGGTGGAATTGTTGAGAGTGATTCTCAATTGGATTCTCCTAATGGAAatgattcttcttcttctgcgCTTGAGATTGTGATTGATTCTCCAAGTTCCGAGGTAAGtgagaatgaaaatggaaatggaaatgaCAGTAACGGGAGTGTTAATTTCAGTTCTTCTATTTCTATGTTAGAAACTTCATCTACTTTGCTGGGAATGGGATGCACTTTGAAGAGGGTTCTAAGCAAAGTTTTCCCATCTTCTAATGTCAACGAGTTAGATGCTTG 806 0.402 MVSESESPNKPMTPLNQMLQNVFSDNSNIMLAAIISLLLVILFVLLLHVYAKWFLAQAQGQALASRRRRRRSVTVSDVLGPSRFHHFTIEDASISSSPTKGLDSVIVAAIPLFLYEETEEKEKQSRDEHELECVICLSSFENGEIGRCLPKCRHCFHVECIDMWLGSHSNCPICRAPIVGGIVESDSQLDSPNGNDSSSSALEIVIDSPSSEVSENENGNGNDSNGSVNFSSSISMLETSSTLLGMGCTLKRVLSKVFPSSNVNELDA 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g02092 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 179 IPR013083 -
Bva10g02092 268 SMART ring_2 133 174 IPR001841 -
Bva10g02092 268 Pfam Ring finger domain 132 175 IPR001841 -
Bva10g02092 268 PANTHER RING FINGER DOMAIN-CONTAINING 5 265 - -
Bva10g02092 268 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 5 265 - -
Bva10g02092 268 MobiDBLite consensus disorder prediction 208 227 - -
Bva10g02092 268 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Bva10g02092 268 SUPERFAMILY RING/U-box 132 179 - -
Bva10g02092 268 CDD RING-H2_EL5_like 132 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g02092 Bva-Chr10 14748523 14749743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g02092 21 244 Rapid Response to Elicitors AT3G16720 32.171 1.19e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g02092 - - pvu:PHAVU_006G070000g 239.58