Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g02052 ATGTGCAGTGGTTCCAAGAGGAAACCTTCGGAAACAGATTTTGGGATGGAGGGTGAATATGGGAAAAAAGAAGGGCtgaatcataaaaatttttcccttttgttgGAGTTTTCAGCCTCAGATGATTTAAAGCGTTTCAGATATGCTGTGGAACAAGAGTGTCTTGATATTGATGAGGTGGGTTTATGGTACGGAAGGAGGCTTGGTTCAAGAAAATTGGGTTTTGAAGAGAGGACACCCCTCTTGATTGCTTCTATGTTCGGAAGCAAGGATGTTTTATCTTATATCCTTGAAACAGGTCGTGTCGATGTTAACCGAACTTGTGGGTCGGATGGGGCTACAGCCCTCCACTGTGCAATTACTGGGTGTTCTGCTTCTTCTCCTGAGGTTGTCAAGCTCTTGCTTGATGCATCTGCAGATGTTGGTGCTGTTGATGCATATGGTAAGAGACCTTTTGATTTGCTCGTGACTGCGGCTAAGGATATCTTCAATTCAAGGAAGAGGATGCTACAAGCCTTACTCAAAGGTTCAGATGGTATTGTTGAGGCATGTTTTCTGTCCGAGGAAGCTGTTGGTCAAATCGAGGATCAGCAGCAGCAAGATATGGCCACACCGCGTGTTTCAAAAGATGGAACCGAGAAGAAAGATTATCCTGTTGATCACTCTCTTCCAGACATAAAGAATGGAATCTATGGTACTGATGAGTTTAGAATGTATGCATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCACATGATTGGACCGAGTGCCCCTTTGTTCATCCTGGGGAAAATGCAAGGCGGCGTGATCCGCGAAAATATCATTATAGTTGTGTCCCTTGCCCTGAATTTAGGAAAGGATCTTGCAGCAAAGGGGATGCCTGTGAATATGCACATGGTATTTTTGAATGTTGGCTGCATCCTGCCCAGTATCGGACCCGGCTATGCAAGGATGAGGGTGCATGCGCCAGAAGAGTTTGCTTCTTTGCTCACAAACCCGAGGAGCTTCGCCCCTTGTATGCTTCTACAGGTTCAGCTATGCCTTCTCCAAGATCATTTTCATCAAATGCTTCCTCATTGGAGATGGGATCAATCATCCCTCTTACACTTGGTTCTCCATCTGTCCTAATACCACCTACCTCAACGCCACCTTTGACTCCATCGGGACCATCCTCTCCTGGGGTTGGTACCATGTGGCCGTCCCAGCCTAGTAGTGCAGTCCCTACTCTGCATCTGCCCAGTAGTAGATTGAAAACTGCGGTAGCTGCTAGAGATCTTGATTTAGATATTGAATTGCTTGGACTTGAAAATCATCGACGCAGACAGCAGCTAATGATGGATGAGATGTCTGGGCTTGCCTCTCCATCTGGCTGGAACATGTCCAATAATTCGCCTTTTCCTGTTTCTCTGGGTGATCATGCTGGGGAGTTAAATGGTCTTGGAGGGTTAAAACCTACTAACCTTGAAGATTATTTTGGGTCTGTTGATCCATCAGTTTTGTCTAAATTACAGGGAATCTCACTAGATGCTGTAGTAGGATCTCATTTACAATCTCCAACTGGAATCCAAGCGCGTCATAATGGAAATCAGCAGCTGCGAAGCTATTCATCTGGCCTTTCAACTTCTAATGTGGTGGGATCACCAAAGTTTGGTGTTGAGCCATCAGGCCCAGCAGCCACCATGGCTTTCAATTCAAGACTTGCAGCATTTTCAAAGCGAAGCCAGAGCTTTGTTGAGCGCAGTGTGGTGAACCATCACTCAGAGCTCCCTTCTCCTTCTGCTTCTGCAGCAAGAAAGCCTTCTCCTTTCTCTGATTGGGGCTCCCCTGATGGCAAATTGGATTGGGCTATCCATGGAGAAGAGCTGAATAAGCTGAGGAAATCGGCTTCTTTCGGGTTTAGGGGAAATAACAGTCCTCTAAAAACGGCTCCAACCAGAATGGCAGCAAATGCCGATGACCCAGATGTTTCTTGGGTTCATTCAGTTGTGAAGGATGCTCCGTCGTCGGAATCGGAGCAATTCAGTGTTGAAGAACAGCAGCAGAAGCTGCTATGCCATCACAACAATGGAACAGAAGCAGTTCCAGCTTGGTTGGAGCAACTGTACAAGGAACAGGAGCAGATAGTGGCGTG 2132 0.4592 MCSGSKRKPSETDFGMEGEYGKKEGLNHKNFSLLLEFSASDDLKRFRYAVEQECLDIDEVGLWYGRRLGSRKLGFEERTPLLIASMFGSKDVLSYILETGRVDVNRTCGSDGATALHCAITGCSASSPEVVKLLLDASADVGAVDAYGKRPFDLLVTAAKDIFNSRKRMLQALLKGSDGIVEACFLSEEAVGQIEDQQQQDMATPRVSKDGTEKKDYPVDHSLPDIKNGIYGTDEFRMYAFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDEGACARRVCFFAHKPEELRPLYASTGSAMPSPRSFSSNASSLEMGSIIPLTLGSPSVLIPPTSTPPLTPSGPSSPGVGTMWPSQPSSAVPTLHLPSSRLKTAVAARDLDLDIELLGLENHRRRQQLMMDEMSGLASPSGWNMSNNSPFPVSLGDHAGELNGLGGLKPTNLEDYFGSVDPSVLSKLQGISLDAVVGSHLQSPTGIQARHNGNQQLRSYSSGLSTSNVVGSPKFGVEPSGPAATMAFNSRLAAFSKRSQSFVERSVVNHHSELPSPSASAARKPSPFSDWGSPDGKLDWAIHGEELNKLRKSASFGFRGNNSPLKTAPTRMAANADDPDVSWVHSVVKDAPSSESEQFSVEEQQQKLLCHHNNGTEAVPAWLEQLYKEQEQIVA 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g02052 710 Gene3D - 276 338 - -
Bva10g02052 710 MobiDBLite consensus disorder prediction 391 410 - -
Bva10g02052 710 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 300 IPR000571 GO:0046872
Bva10g02052 710 Gene3D - 31 175 IPR036770 -
Bva10g02052 710 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Bva10g02052 710 MobiDBLite consensus disorder prediction 195 219 - -
Bva10g02052 710 PANTHER UNKEMPT FAMILY MEMBER 21 708 IPR045234 -
Bva10g02052 710 MobiDBLite consensus disorder prediction 380 410 - -
Bva10g02052 710 SMART c3hfinal6 310 333 IPR000571 GO:0046872
Bva10g02052 710 SMART c3hfinal6 275 301 IPR000571 GO:0046872
Bva10g02052 710 Pfam Ankyrin repeats (3 copies) 74 143 IPR002110 GO:0005515
Bva10g02052 710 SMART ANK_2a 111 143 IPR002110 GO:0005515
Bva10g02052 710 SMART ANK_2a 76 106 IPR002110 GO:0005515
Bva10g02052 710 SUPERFAMILY Ankyrin repeat 35 157 IPR036770 -
Bva10g02052 710 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 21 708 - -
Bva10g02052 710 ProSiteProfiles Ankyrin repeat region circular profile. 111 145 - -
Bva10g02052 710 ProSiteProfiles Zinc finger C3H1-type profile. 280 302 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g02052 Bva-Chr10 14243488 14246584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g02052 31 705 C2H2 Transcription Factor Family AT5G12850 39.889 1.40e-144 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva10g02052 Ank_2 9.8e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g02052 - - aprc:113846970 979.933