Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01988 ATGTATTGGCCATTCCAGTTTCTACTGTTGCGTCCGAGTCTTGCTTCAGCACTGGGGGATGAGTCCTTGATGTTTTTCGAGGTTCTTTGTCACCAAAGATGGTTGAAATGCACTCAAAATTGGTTGAATCCTAATGAGTACAAGATACAAGAAGTCTTTGATGAGTTTCAAGCAAATGATGCTGTTATTAATGaaattagtGGTGCCATGACCTCAATGACCAACCAAGCAATTCAAGAGGGTAATAGAATGTTTTCTATAGAATCTATATTACTTATATTTGTTGGTAATTTGGATGCTAATGTCACTGATGATCATCTAAGGCAAGTTTTTGGTCAGCATGGAGAGTTAGTACATGTTAAGATCCCAGCTGGGAAACAATGTGGGTTTGTTCAATTTGCTAACAGATCTCTTCAGCCCAGGGGGCTTGCAAAAACCCTGTGTGGTTCACCACTTTACATCGCTCTAGAAATCATGCAACTACAAAAGTATGATGCGAAGAACACACAGGCAGATCTCTGGAGTGTTGGTGCAATTTTATTTCAGCTTGTTACAGGAAGAATACCTTTTACCGAAAACAATCAATACAGGTTGATGCcagttttaacattttatactTATAGGTTAATTGAAGCTAAAGATGTTGTGTTTAAACTCCAGTA 662 0.3746 MYWPFQFLLLRPSLASALGDESLMFFEVLCHQRWLKCTQNWLNPNEYKIQEVFDEFQANDAVINEISGAMTSMTNQAIQEGNRMFSIESILLIFVGNLDANVTDDHLRQVFGQHGELVHVKIPAGKQCGFVQFANRSLQPRGLAKTLCGSPLYIALEIMQLQKYDAKNTQADLWSVGAILFQLVTGRIPFTENNQYRLMPVLTFYTYRLIEAKDVVFKLQ 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01988 220 Pfam Protein kinase domain 136 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva10g01988 220 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 161 IPR000504 GO:0003723
Bva10g01988 220 SUPERFAMILY RNA-binding domain, RBD 85 136 IPR035979 GO:0003676
Bva10g01988 220 Gene3D Transferase(Phosphotransferase) domain 1 133 216 - -
Bva10g01988 220 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 134 199 IPR045269 GO:0004674|GO:0006914
Bva10g01988 220 PANTHER SERINE/THREONINE-PROTEIN KINASE ATG1B 134 199 - -
Bva10g01988 220 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 136 IPR000504 GO:0003723
Bva10g01988 220 SUPERFAMILY Protein kinase-like (PK-like) 136 210 IPR011009 -
Bva10g01988 220 SMART rrm1_1 92 155 IPR000504 GO:0003723
Bva10g01988 220 Gene3D - 92 132 IPR012677 -
Bva10g01988 220 ProSiteProfiles Protein kinase domain profile. 1 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01988 Bva-Chr10 13780842 13784612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01988 138 194 Miscellaneous Gene Families AT1G29230 49.123 1.83e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Bva10g01988 Pkinase 1.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01988 K08269 - gmx:100791596 103.99