Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01962 atgaataaaataaaaaatcgtCTTGAGGCTGAGAGAACGGCGAGGGAAAGAGATCCATACATAGTCTTGCATCTTTGTCTAGAATTTGCTGAGCAAAGGAAGTTGAATGCTGACCTTTATCATGCAAAGCAACTGGTTGAACTTGAAGCTGGATCTAGTATTAGAGGATATATACTTCTGGCGCGGATATTATCAGCTCAAAAACAGTCCAGGCTAAAAGCTCAGGCAGCACAAATAAGTATCTCAAGAGTAAGGGAAACCGCGATCGAAGTttggaaatggaaaatatGGCATGATTTAGCCAACATCTATACTACTTTGTCGCAATGGCAAGATGCTGAAGTTTGTCTTTCAAAATCTCAGGCTATCCATCCTTATTCTGCTTCTAGATTTCATTCCACAGGTTTACTCCATGAAGCTAGAGGCCTTCACCAAGAAGCTCTGAAATCATTTAGGAAAGCATTAGATATCGATCCAAACCACGTGGCGAGTTTGATATCCACAGCCTGTGTTCTCATGCAGCTTGGTGGTCAATCATCATTCATTGCAAGAAGCCTGCTTACTGATGCACTAAGACTAGATAGAACAAACCCTTCTGCTTGGTACAATCTTGGGCTGCTTTACAAAGCTGATGCAGGAACATCGGCATGGGAAGCTGCTGAATGCTTTGAGGCAGCTGCTTTTCTTGAAGAATCTTCTCCAATCGAACCCTTCAGATA 719 0.4089 MNKIKNRLEAERTARERDPYIVLHLCLEFAEQRKLNADLYHAKQLVELEAGSSIRGYILLARILSAQKQSRLKAQAAQISISRVRETAIEVWKWKIWHDLANIYTTLSQWQDAEVCLSKSQAIHPYSASRFHSTGLLHEARGLHQEALKSFRKALDIDPNHVASLISTACVLMQLGGQSSFIARSLLTDALRLDRTNPSAWYNLGLLYKADAGTSAWEAAECFEAAAFLEESSPIEPFR 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01962 239 Gene3D Tetratricopeptide repeat domain 3 235 IPR011990 GO:0005515
Bva10g01962 239 ProSiteProfiles TPR repeat profile. 128 161 IPR019734 GO:0005515
Bva10g01962 239 SMART tpr_5 94 127 IPR019734 GO:0005515
Bva10g01962 239 SMART tpr_5 198 233 IPR019734 GO:0005515
Bva10g01962 239 SMART tpr_5 128 161 IPR019734 GO:0005515
Bva10g01962 239 PANTHER PROTEIN NPG1 74 239 IPR043376 -
Bva10g01962 239 PANTHER PROTEIN NPG1 9 70 IPR043376 -
Bva10g01962 239 PANTHER OS10G0471400 PROTEIN 74 239 - -
Bva10g01962 239 SUPERFAMILY TPR-like 94 209 IPR011990 GO:0005515
Bva10g01962 239 PANTHER OS10G0471400 PROTEIN 9 70 - -
Bva10g01962 239 Pfam Tetratricopeptide repeat 135 161 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01962 Bva-Chr10 13399482 13400926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01962 8 69 Calmodulin-binding Proteins AT4G28600 45.161 2.05e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01962 K21843 - jre:108991205 308.916