Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01926 ATGGAAGCTCACGGCCTTTATTGGAATCCTGCACTTCAAGATGAAGATGAGGTAAACATATACTTAAGGGCAACGAAAACAATACGATCGAGTGTCAAAAAATCACAAACAGTCTCAAATTTGAAAGAGATGATAAGTATGGAGCAAGGAATTTCTGAACAACTCCAGCGGCTGTTCTTCTCTGGCCGAAGGCTCGCAGATAATCAAACATTTGATCAATGTGGAATCGAGAAAGATTCAACTCTTGACCTGCAGGTTGAGAGCTATGAAAGAATGAAGATTTACATCAAGTACCTCTCAGTCCACAGAACAATTGTTTTGGAACCAAGACTAACTGACTCAATCAAGCAAATCAAGACGATGATTCAAACTGTAGATAGGTTGGAGCCAGATAGGGTTTCCCTAATATATAAAGGGAAGATACTGAAAGAAGAGAGCACTTTGGCCTATCTCCAAGTGCCAAGCGATTCAATAATTTACCTTGTGACAATCCCTAATGAAGATTTCTCAGTTTATGTGAAGGAACAAAATGGAGACACCACCAAACTTGAAGTTAAAGCTGCATTCACCATTCAAGCTGTGAAGGCAATGGTTGGAATCATGACAGACAAAAGAGAGAGTGAATGGCGGTTGGCACTTGCCGGGAAACAGCTCGAGGAACACCGGAGCTTGGCTTACTACGGCATCAAGGAAGGAACAACCTTGGACATGTACCCTAGAAAATTTCAGGTATTTGTGAAGACTTGGAATGGGAGAACTGTTACTCTTGATGTTGATCAAGATAAGGATGTGAGGGTTTTGAAGTTGGACTTCGTCGAAAAGATGACGAAGCTGATGGAGGTGATGCCTAGGCGCAGTGCTCGTCCTTTGAAGCTTGTTTGTGAAGGGAAGGAACTTCAAGATGGTGCGAAGCTTTCAAGCTACAACATACAAAAGGACTCCACAATTCATGAGAATTG 959 0.4202 MEAHGLYWNPALQDEDEVNIYLRATKTIRSSVKKSQTVSNLKEMISMEQGISEQLQRLFFSGRRLADNQTFDQCGIEKDSTLDLQVESYERMKIYIKYLSVHRTIVLEPRLTDSIKQIKTMIQTVDRLEPDRVSLIYKGKILKEESTLAYLQVPSDSIIYLVTIPNEDFSVYVKEQNGDTTKLEVKAAFTIQAVKAMVGIMTDKRESEWRLALAGKQLEEHRSLAYYGIKEGTTLDMYPRKFQVFVKTWNGRTVTLDVDQDKDVRVLKLDFVEKMTKLMEVMPRRSARPLKLVCEGKELQDGAKLSSYNIQKDSTIHEN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01926 319 Gene3D - 18 87 - -
Bva10g01926 319 SUPERFAMILY Ubiquitin-like 240 317 IPR029071 -
Bva10g01926 319 ProSiteProfiles Ubiquitin domain profile. 18 87 IPR000626 GO:0005515
Bva10g01926 319 Gene3D - 241 318 - -
Bva10g01926 319 SUPERFAMILY Ubiquitin-like 87 162 IPR029071 -
Bva10g01926 319 CDD Ubl_ubiquitin_like 94 162 - -
Bva10g01926 319 SMART ubq_7 18 87 IPR000626 GO:0005515
Bva10g01926 319 SMART ubq_7 242 318 IPR000626 GO:0005515
Bva10g01926 319 SMART ubq_7 92 164 IPR000626 GO:0005515
Bva10g01926 319 SMART ubq_7 169 240 IPR000626 GO:0005515
Bva10g01926 319 SUPERFAMILY Ubiquitin-like 10 86 IPR029071 -
Bva10g01926 319 Pfam Ubiquitin family 171 238 IPR000626 GO:0005515
Bva10g01926 319 Pfam Ubiquitin family 244 317 IPR000626 GO:0005515
Bva10g01926 319 Pfam Ubiquitin family 96 163 IPR000626 GO:0005515
Bva10g01926 319 Pfam Ubiquitin family 25 84 IPR000626 GO:0005515
Bva10g01926 319 ProSiteProfiles Ubiquitin domain profile. 92 162 IPR000626 GO:0005515
Bva10g01926 319 PRINTS Ubiquitin signature 47 67 IPR019956 -
Bva10g01926 319 PRINTS Ubiquitin signature 26 46 IPR019956 -
Bva10g01926 319 PRINTS Ubiquitin signature 68 89 IPR019956 -
Bva10g01926 319 ProSiteProfiles Ubiquitin domain profile. 169 241 IPR000626 GO:0005515
Bva10g01926 319 PANTHER - 13 277 - -
Bva10g01926 319 PANTHER UBIQUITIN 13 277 - -
Bva10g01926 319 CDD Ubl_ubiquitin_like 18 84 - -
Bva10g01926 319 CDD Ubl_ubiquitin_like 171 238 - -
Bva10g01926 319 Gene3D - 88 168 - -
Bva10g01926 319 Gene3D - 169 238 - -
Bva10g01926 319 SUPERFAMILY Ubiquitin-like 166 241 IPR029071 -
Bva10g01926 319 ProSiteProfiles Ubiquitin domain profile. 242 319 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01926 Bva-Chr10 12966554 12969395 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01926 26 84 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 42.373 6.19e-07 46.2