Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01925 ATGATTAGAATGGAGCAAGGAATTTCTGAACAACAACAGCAGCTGTTCTTCTCTGGCCAAAGACTCCCAGACAATCAAACATTTGATCAATGTGGAATCAAGAACTATTCAACTCTTGACCTGCAGGTTGAGAGCTATGAAAGAATGAAGATTTACGTCAAGTACCTCTCAGTCCACAGAACAATTGTTTTGGAACCAAGACTATCTGATTCAATCAGGCAAATCAAGACCATGATTCAAACCGTAGATAGGTTGGAGCCAGATAGGGTTTCCCTGATATATAAAgggaaaatattgaaagaagAGAGCACTTTGGCCTATCTCCAAGTGCCAAGCGATTCAACAATATACCTTGTGACAATCCCTAATGAAGATTTCTCAGTTTATGTGAAGGAACAAAATGGAGACACCACCAAACTTGAAGTTAAAGCTGCATTCACCATTCAAGATGTGAAGGCAATTGTTGGAATCATGACAGACAAAAGAGAGAGTGAATGGCGGTTGGCACGTTCCGGGAAACAGCTCGAGGAACACCGGAACTTGGCTTACTACGGCATCACGGAAGGAACAAATTTGGACATGTACCCTAGAAAATTTCAGGTATTTGTGAAGACTTGGAATGGGAGAACTGTTACTCTTGATGTTGATCAAGATGAGGATGTTAAGGTTTTGAAGTTGGACTTCTGtgaaaagatgaagaagctGGTGGAGATGCTGCCTAGGCGCAGTGCTCGTCCTTTGAAGCTTGTTTATGAGGGGAAGGAGCTTCAAGATGGTGAGAAGCTCTCAAGCTACAACATCCAAAAGGACTCCACAATTCATGAGAACTG 830 0.406 MIRMEQGISEQQQQLFFSGQRLPDNQTFDQCGIKNYSTLDLQVESYERMKIYVKYLSVHRTIVLEPRLSDSIRQIKTMIQTVDRLEPDRVSLIYKGKILKEESTLAYLQVPSDSTIYLVTIPNEDFSVYVKEQNGDTTKLEVKAAFTIQDVKAIVGIMTDKRESEWRLARSGKQLEEHRNLAYYGITEGTNLDMYPRKFQVFVKTWNGRTVTLDVDQDEDVKVLKLDFCEKMKKLVEMLPRRSARPLKLVYEGKELQDGEKLSSYNIQKDSTIHEN 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01925 276 SUPERFAMILY Ubiquitin-like 123 197 IPR029071 -
Bva10g01925 276 SUPERFAMILY Ubiquitin-like 196 274 IPR029071 -
Bva10g01925 276 CDD Ubl_ubiquitin_like 128 195 - -
Bva10g01925 276 ProSiteProfiles Ubiquitin domain profile. 199 276 IPR000626 GO:0005515
Bva10g01925 276 ProSiteProfiles Ubiquitin domain profile. 1 44 IPR000626 GO:0005515
Bva10g01925 276 Gene3D - 1 45 - -
Bva10g01925 276 Gene3D - 197 275 - -
Bva10g01925 276 PRINTS Ubiquitin signature 60 80 IPR019956 -
Bva10g01925 276 PRINTS Ubiquitin signature 102 123 IPR019956 -
Bva10g01925 276 PRINTS Ubiquitin signature 81 101 IPR019956 -
Bva10g01925 276 SUPERFAMILY Ubiquitin-like 2 44 IPR029071 -
Bva10g01925 276 Gene3D - 46 123 - -
Bva10g01925 276 CDD Ubl_ubiquitin_like 51 119 - -
Bva10g01925 276 PANTHER UBIQUITIN 6 234 - -
Bva10g01925 276 PANTHER - 6 234 - -
Bva10g01925 276 Pfam Ubiquitin family 201 274 IPR000626 GO:0005515
Bva10g01925 276 Pfam Ubiquitin family 2 41 IPR000626 GO:0005515
Bva10g01925 276 Pfam Ubiquitin family 51 120 IPR000626 GO:0005515
Bva10g01925 276 Pfam Ubiquitin family 128 194 IPR000626 GO:0005515
Bva10g01925 276 CDD Ubl_ubiquitin_like 1 41 - -
Bva10g01925 276 Gene3D - 124 196 - -
Bva10g01925 276 ProSiteProfiles Ubiquitin domain profile. 49 119 IPR000626 GO:0005515
Bva10g01925 276 ProSiteProfiles Ubiquitin domain profile. 126 198 IPR000626 GO:0005515
Bva10g01925 276 SUPERFAMILY Ubiquitin-like 44 119 IPR029071 -
Bva10g01925 276 SMART ubq_7 126 197 IPR000626 GO:0005515
Bva10g01925 276 SMART ubq_7 49 121 IPR000626 GO:0005515
Bva10g01925 276 SMART ubq_7 199 275 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01925 Bva-Chr10 12962086 12962916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01925 199 274 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.474 7.32e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01925 - - qsu:112029580 202.601