Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01908 ATGGGGCAACAGCAATCCAGGGGCGAGCTTGTCTATCAACAGGTCAGTTATGGGAACGCCGAAGGAATCAAAGTCCTTCATAGAGAAGGTGCAAGCCTCGAGTGGATTGATAGGGAAGGAAAGACACCATTGATTGTTGCTTGCATGAATCCAGAGTTTTATGATGTTGCCAAAACTCTGATAGAACTTGGTGCCAATATCAATGCATATCGTCCGGGTCGACACGCGGGGACTCCATTGCATCATGCAGCCAAAAGAGGTCTTGAAAGTATTGTTAAGCTACTTCTTTCGCATGGAGCAAACCCATTGGTATTGAATGACGATTGCCAAACTGCTCTTGATGTTGCCAGGGCTAAAGGGCACACCAACATTGTCCGTGCATTGGAGAGTCATCTTTGCTTATTCTCTGGTTGGCTGCGAGAGTTTCATGGACCAGGATTCCTAGAAGTAGTAGCTCCTCATTTGGTATCTAGAAAAGTATGGGCTGTTATTTTACCAGTTGGCTCCCGTTCTCTTGCCAGACCTTACAAGTTGGAACTTGCCTTATATTCTAGTTTGCAGGATGCGCAACCACGCACAGTTATTGCTCTGTGGAAGGCCAATTTAGAAGAACCAAAGCTACACCAGTCTGATCCTTCAGTGACTATTGTTGATAATTCTAGCAAAACACGCATTAAACTTGGACCTGCAAATGACAATGACAAGCAACAACTTGTGTGGTTTTCTGATGCGTGCAAAGGAATCCCAATGGCAAGGCATCCAGCATTTTTGCATAACATCCCGGCTACAGTTCGACCAACAGCGCCCCCAGCTGCAGAAGATCTGGAGATGGCTATGGCTATCAATGCATCCCTTCAGTCTGCCATGCAGGAGAGGCCACCTCTTCCCGATTCGCAGCCAAGCTTCGAAGGAAGTTCTTCAAGTGGCCAAACATATTCCGGTAACTATGGTTCACTGGGTCCATCAAAGCTGAATATGAATAGTAGCGAATCTGTTCATGAAGCCGACCCACGTGGCAGTTCAAATCAGCATGTCCGGATTCATGACAAAGTCCCTGGCCAAACTGCTAGTGGCCTGGATTCATTTCCATCAGCTCCTCCAAACATAGATGATATTCCAGCACATGGTCCCGTTCGGTATCCTTCGATTAATATAAGCCCTGTTGATATGCCATCTCCAGCTGTTGAGAAGTTACctacagaagaaaaaaaagatgtcGGAAGTAGTTCGTGCGTGATATGTCTAGATGCTCCAGCCGAGGGGGCTTGCATCCCCTGTGGCCATGTTGCTGGATGCATGCCATGCTTGAATGAAGTCAAAGCAAAGAAGTGGGGTTGCCCTGTCTGTCGAGCAATGATTGACCAGGTGATAAAGATATATCATGTTTG 1388 0.4611 MGQQQSRGELVYQQVSYGNAEGIKVLHREGASLEWIDREGKTPLIVACMNPEFYDVAKTLIELGANINAYRPGRHAGTPLHHAAKRGLESIVKLLLSHGANPLVLNDDCQTALDVARAKGHTNIVRALESHLCLFSGWLREFHGPGFLEVVAPHLVSRKVWAVILPVGSRSLARPYKLELALYSSLQDAQPRTVIALWKANLEEPKLHQSDPSVTIVDNSSKTRIKLGPANDNDKQQLVWFSDACKGIPMARHPAFLHNIPATVRPTAPPAAEDLEMAMAINASLQSAMQERPPLPDSQPSFEGSSSSGQTYSGNYGSLGPSKLNMNSSESVHEADPRGSSNQHVRIHDKVPGQTASGLDSFPSAPPNIDDIPAHGPVRYPSINISPVDMPSPAVEKLPTEEKKDVGSSSCVICLDAPAEGACIPCGHVAGCMPCLNEVKAKKWGCPVCRAMIDQVIKIYHV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01908 462 SMART ring_2 411 449 IPR001841 -
Bva10g01908 462 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Bva10g01908 462 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Bva10g01908 462 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Bva10g01908 462 SMART ANK_2a 39 69 IPR002110 GO:0005515
Bva10g01908 462 SMART ANK_2a 75 104 IPR002110 GO:0005515
Bva10g01908 462 SMART ANK_2a 108 137 IPR002110 GO:0005515
Bva10g01908 462 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Bva10g01908 462 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Bva10g01908 462 ProSiteProfiles Zinc finger RING-type profile. 411 450 IPR001841 -
Bva10g01908 462 Pfam Zinc finger, C3HC4 type (RING finger) 409 456 - -
Bva10g01908 462 PANTHER ROLLING PEBBLES, ISOFORM B 1 462 - -
Bva10g01908 462 SUPERFAMILY Ankyrin repeat 13 133 IPR036770 -
Bva10g01908 462 SUPERFAMILY RING/U-box 401 456 - -
Bva10g01908 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 462 IPR013083 -
Bva10g01908 462 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 1 462 - -
Bva10g01908 462 MobiDBLite consensus disorder prediction 288 378 - -
Bva10g01908 462 MobiDBLite consensus disorder prediction 288 336 - -
Bva10g01908 462 Gene3D - 8 152 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01908 Bva-Chr10 12838201 12841746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01908 409 459 C3H Transcription Factor Family AT3G06140 33.333 1.74e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01908 - - lang:109354249 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01908 10 12838201 12841746 Bva10g01908 10 12838201 12841746 ECH