Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01906 ATGCAACTAAGGGGTAGTACCGGAGACGGTTTCCGTATCAGTGTGTCAAGTGCTTCAACTGGAGGATCTGGACCAGATGACATTGAGTCATTAGGTGATGTTTATGTATGGGGAGAGGTTTGGGGAGAAGGCGTTTCACCTGATGGATCGGTGAGTCAAGGTCCTTCAAAGACAGATGTGTTGCTTCCTAAGCTCTTGGAGTCAAATGTTGTTATTGATGTTCACCAGATTGCTTCTGGTGTGAAACACATTGCTCTAGTTACAAGGCAAGGGGAGGTTTTTACATGGGGAGAGGAGTGTGGGGGAAGACTTGGTCATGGTATTGATAAAGACTTTGGTGGTCCCCGTCTTGTTGAGTCACTGGCAGTTATTAATGTGGAGTTTGTTGCATGTGGAGAGTATCATACATGTGCTTTATCTACAACTGGTGATCTATTTACTTGGGGTGATGGTACACATAATGCTGGACTTCTTGGCCATGGAACTGATGCCAGTCACTGGATGCCTAAGAGGGTTACTGGTCCTTTAGAAGGACTTCAAGTTTTATCCATTGCTTGTGGGTCATGGCACACAGCATTGGCAACTTCCAATGGAAAGCTGTTCACTTTTGGTGATGGATCATTTGGTGTCTTGGGCCATGGAGATCGGCAGAGTGTATCATGTCCAAAGGAGGTACAATTATTGAGTGGACTAAAGACTGTTAAGGTTGCATGTGGAGTATGGCACACTGCAGCTATTGTAGAAGTTATTTGTCAGTCTGGTTCAAGTGCTTCATCCAGAAAGCTCTTCACTTGGGGTGATGGTGACAACTATCGTCTGGGACATGGAAACAAGGAAACCCACCTCCAACCTACCTGTGTCTCTGCACTTATTGAATATGATTTTCACCAGATTGCATGTGGGCACACTATGACTGTTGCACTTACTACATCAGGTCATGTTTTTACTATGGGGAGTTCCTCTTATGGCCAATTAGGAAGTCCTAACGCTGATGGAAAAACACCCGTCTTAGTAAAAGATAAGTTGGTTGGTGAATTTGTTGAGGAATTATCATGTGGAGCACATCATGTTGCAGTCTTGACATCAAGAAGTGAACTATGCACTTGGGGAAGAGGTGCCAATGGAAGATTGGGACATGGAGACGTGGAAGACCGGAAATCTCCAACACTGGTCGAAGCCTTGAAAGATAGGCATGTGAAGAATATCTCATGTGGCTCAAACTTCACATCCTGTGTATGTCTCCATAAATGGATTTCTGGAGCTGACCAATCTGTTTGCACTGGTTGCCGTCAAGCATTTGGTTTTACTAGAAAAAGGCACAATTGTTATAATTGTGGATTGGTACATTGCCATGCTTGTAGTTCCAAAAAAGCATATAGAGCAGCACTGGCTCCAACACCAGGCAAACCACATCGTGTGTGTGATGCTTGTTTTGCAAAGCTTAAAGCTGCGGAGTCTGGTAGTGCTTCCACTTTTAACAGAAAATTTACTCCTCCTCGTCGCTCCATAGATGGCAGTGGCAGGGAAAGAGTAGACTTTCGAGAGCTAAGATCTTCTTCAAGAGTTCTCGTATCTCCCATAACTGAACCAGTGAAATACCTTGAGATAAAAACAGGGAAGCCTGGAGCgaaatttgcttcttcttctataGTTCGAGCTTCTCAAGTTCCATCACTTTTGCAATTAAAAGATCTTGCATTTCCAAGTTCATTGAGTGCCATTCAGAATGCTTTCAAGCCTACCGTACCTCCACCAAGTCCACCAGTGACACCACCTGGGCAATCAAGACCTGCATCACCATACACAAGACGACCAAGCCCACCCCGTTGTGCCACTACTGGTGGATTTTCTAAAAGCCTTATTGACAGCTTGAGGAGGACAAATGAGATTCTGAACCAAGAAGTCTCAAAATTGCAGAACCAAGTTCGAAGTTTGAAGCAGAAGAGTGACTTGCAAGATGTAGAGAATAACAAGCTTCAAAAAAGAGTTGAGGAAGCCACCAAATTGACCGAAGAGGAATCTTCTAAACATAGAGTAGCAAAGAGTTTTATTAGGTCCATGACAGATCAGTTGAAGGAAATTGTTGAGAAGTTGCCACCAGAGGTTTCAGATGGTGAAACCTTGAGAACCGTGCATGCTCAGGGTGAAGAATTTCTAAAGGAAGATCAGGAACCCGAAGCACCTTCTTCCTCAGCAGAAAATCTAGAGTCTGACCAACAGAACGCACCAGATGCATCAGCCACAGAAAGTGAATCTTCTAAATTGCAAGAGCAAGAAACGAAAGAAAACGTAGATGCTGTAGGAGCTAATCCATCTCAAGATGGAGGGAATACTcctgaaaaaagtaaaacgcCATCTGTATCAAGTACAGAAGGAGCAATGCCTCCACAAAGTGTAGAAAATGGTTCAAGATCACCAGATCACTCAAGAGATGGGATAGAAGGAGGAAAACAAGTCATTGAACAATTTGAACCTGGTGTTTATGTGAGTCTCATAGTACTACCCAGTGGTACCAAACTTTTCAAACGAGTTAGATTCAGTAAGCGAAGGTTCGACGAACATCAGGCAGAAGAATGGtggaacaaaaacaaagatagAGTGCTTAGGAGATATAGTCCGTTGTCGTCGTCGTcgtcatcatcatcaccatcaACAACAACGCACGCGGCAACAGATCCTGCAACTACTGCCTCACCTAGCACCCCAACACCACCACCTGCTGAAGAAAATGTGCAGGCATCACCTTCAGAAACGTA 2756 0.4303 MQLRGSTGDGFRISVSSASTGGSGPDDIESLGDVYVWGEVWGEGVSPDGSVSQGPSKTDVLLPKLLESNVVIDVHQIASGVKHIALVTRQGEVFTWGEECGGRLGHGIDKDFGGPRLVESLAVINVEFVACGEYHTCALSTTGDLFTWGDGTHNAGLLGHGTDASHWMPKRVTGPLEGLQVLSIACGSWHTALATSNGKLFTFGDGSFGVLGHGDRQSVSCPKEVQLLSGLKTVKVACGVWHTAAIVEVICQSGSSASSRKLFTWGDGDNYRLGHGNKETHLQPTCVSALIEYDFHQIACGHTMTVALTTSGHVFTMGSSSYGQLGSPNADGKTPVLVKDKLVGEFVEELSCGAHHVAVLTSRSELCTWGRGANGRLGHGDVEDRKSPTLVEALKDRHVKNISCGSNFTSCVCLHKWISGADQSVCTGCRQAFGFTRKRHNCYNCGLVHCHACSSKKAYRAALAPTPGKPHRVCDACFAKLKAAESGSASTFNRKFTPPRRSIDGSGRERVDFRELRSSSRVLVSPITEPVKYLEIKTGKPGAKFASSSIVRASQVPSLLQLKDLAFPSSLSAIQNAFKPTVPPPSPPVTPPGQSRPASPYTRRPSPPRCATTGGFSKSLIDSLRRTNEILNQEVSKLQNQVRSLKQKSDLQDVENNKLQKRVEEATKLTEEESSKHRVAKSFIRSMTDQLKEIVEKLPPEVSDGETLRTVHAQGEEFLKEDQEPEAPSSSAENLESDQQNAPDASATESESSKLQEQETKENVDAVGANPSQDGGNTPEKSKTPSVSSTEGAMPPQSVENGSRSPDHSRDGIEGGKQVIEQFEPGVYVSLIVLPSGTKLFKRVRFSKRRFDEHQAEEWWNKNKDRVLRRYSPLSSSSSSSSPSTTTHAATDPATTASPSTPTPPPAEENVQASPSET 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01906 918 MobiDBLite consensus disorder prediction 763 803 - -
Bva10g01906 918 Gene3D - 253 415 IPR009091 -
Bva10g01906 918 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 879 - -
Bva10g01906 918 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 420 482 IPR017455 -
Bva10g01906 918 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 38 90 IPR000408 -
Bva10g01906 918 Pfam Transcription factor BRX N-terminal domain 672 705 IPR027988 -
Bva10g01906 918 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 143 197 IPR000408 -
Bva10g01906 918 MobiDBLite consensus disorder prediction 728 753 - -
Bva10g01906 918 SUPERFAMILY FYVE/PHD zinc finger 416 485 IPR011011 -
Bva10g01906 918 MobiDBLite consensus disorder prediction 1 27 - -
Bva10g01906 918 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 236 246 IPR000408 -
Bva10g01906 918 Gene3D - 13 252 IPR009091 -
Bva10g01906 918 Pfam Transcription factor regulating root and shoot growth via Pin3 817 871 IPR013591 -
Bva10g01906 918 MobiDBLite consensus disorder prediction 870 897 - -
Bva10g01906 918 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 364 415 IPR000408 -
Bva10g01906 918 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 91 142 IPR000408 -
Bva10g01906 918 MobiDBLite consensus disorder prediction 710 727 - -
Bva10g01906 918 Coils Coil 656 676 - -
Bva10g01906 918 MobiDBLite consensus disorder prediction 696 818 - -
Bva10g01906 918 MobiDBLite consensus disorder prediction 1 24 - -
Bva10g01906 918 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 77 87 IPR000408 -
Bva10g01906 918 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 312 363 IPR000408 -
Bva10g01906 918 Pfam Regulator of chromosome condensation (RCC1) repeat 143 193 IPR000408 -
Bva10g01906 918 Pfam Regulator of chromosome condensation (RCC1) repeat 91 139 IPR000408 -
Bva10g01906 918 Pfam Regulator of chromosome condensation (RCC1) repeat 311 360 IPR000408 -
Bva10g01906 918 Pfam Regulator of chromosome condensation (RCC1) repeat 366 411 IPR000408 -
Bva10g01906 918 Pfam Regulator of chromosome condensation (RCC1) repeat 262 308 IPR000408 -
Bva10g01906 918 Pfam Regulator of chromosome condensation (RCC1) repeat 197 246 IPR000408 -
Bva10g01906 918 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 198 249 IPR000408 -
Bva10g01906 918 Coils Coil 621 648 - -
Bva10g01906 918 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 416 493 IPR013083 -
Bva10g01906 918 MobiDBLite consensus disorder prediction 580 595 - -
Bva10g01906 918 Pfam FYVE zinc finger 416 482 IPR000306 GO:0046872
Bva10g01906 918 PRINTS Chromosome condensation regulator RCC1 signature 93 109 IPR000408 -
Bva10g01906 918 PRINTS Chromosome condensation regulator RCC1 signature 184 200 IPR000408 -
Bva10g01906 918 PRINTS Chromosome condensation regulator RCC1 signature 301 319 IPR000408 -
Bva10g01906 918 PRINTS Chromosome condensation regulator RCC1 signature 359 380 IPR000408 -
Bva10g01906 918 PRINTS Chromosome condensation regulator RCC1 signature 200 214 IPR000408 -
Bva10g01906 918 PRINTS Chromosome condensation regulator RCC1 signature 143 159 IPR000408 -
Bva10g01906 918 SUPERFAMILY RCC1/BLIP-II 32 417 IPR009091 -
Bva10g01906 918 MobiDBLite consensus disorder prediction 578 616 - -
Bva10g01906 918 ProSiteProfiles BRX domain profile. 817 872 IPR013591 -
Bva10g01906 918 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 1 879 - -
Bva10g01906 918 MobiDBLite consensus disorder prediction 862 918 - -
Bva10g01906 918 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 260 311 IPR000408 -
Bva10g01906 918 SMART fyve_4 412 483 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01906 Bva-Chr10 12829732 12836385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01906 814 872 Major Intrinsic Protein MIP AT1G31880 40.678 6.30e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01906 - - twl:120014627 1238.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01906 10 12829732 12836385 Bva10g01906 10 12829732 12836385 ECH