Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01898 ATGGTGAGAGCTCCTTGCTGTGAGAAGATGGGCTTGAAGAAAGGTCCTTGGACCTCTGAAGAAGATCAAATCTTGATATCTTATATTCAGAAAAATGGCCATGGAAACTGGCGTGCTCTCCCAAAGCAAGCAGGGCTCTTGAGATGTGGCAAGAGCTGCAGATTACGTTGGATTAACTATCTGAGGCCAGATATCAAGAGAGGAAACTTTAccaaggaagaagaggaaactATCATCAATATGCATGAGAAGTTAGGCAACAGGTGGTCAGCAATTGCAGCAATGTTACCAGGAAGAACTGACAATGAAATCAAGAATGTGTGGCACACCCacttgaagaagaagctgCAGAAAACAGAGCAGATCAGTTCAGAAACCAAAAAATGCTCCAAACGAAAAATCAAGCGTTCTGATTCCAATTCAAGCACCATAACTCAATCAGAACCAGCAAGCTTCAATTTTCCTGAGAATGAAACTTCTGTGAGCACTTCTTCCAGTGATATTTCTTCTGTCGAAGAAAGCAAGAACATGGATACTATCACAGTCAAGAGTGAAGACATTGAATCTTTGGAGACTCCTGAAATTGATGAAAGCTTTTGGTCTGAAGCAACAATGGATGATAGTCCCACTATCACCATGCCACCATCTTTGACAATCTCAAACGAATTCCCAGTTCAAAACCCATTTCAATCTGTGGAAAACTTCCAACAGGGTTATGGTTTTTCGAGCTTTGTTGACGATGGCATGGATTTCTGGTACGACGTGTTCATCAGAACAGAGCAATCAACAGAGTTGCCAGAGTTCTG 806 0.4007 MVRAPCCEKMGLKKGPWTSEEDQILISYIQKNGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTKEEEETIINMHEKLGNRWSAIAAMLPGRTDNEIKNVWHTHLKKKLQKTEQISSETKKCSKRKIKRSDSNSSTITQSEPASFNFPENETSVSTSSSDISSVEESKNMDTITVKSEDIESLETPEIDESFWSEATMDDSPTITMPPSLTISNEFPVQNPFQSVENFQQGYGFSSFVDDGMDFWYDVFIRTEQSTELPEF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01898 268 CDD SANT 69 112 IPR001005 -
Bva10g01898 268 MobiDBLite consensus disorder prediction 119 176 - -
Bva10g01898 268 CDD SANT 16 61 IPR001005 -
Bva10g01898 268 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva10g01898 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Bva10g01898 268 PANTHER MYB15 1 264 - -
Bva10g01898 268 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva10g01898 268 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Bva10g01898 268 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 264 - -
Bva10g01898 268 Gene3D - 13 66 - -
Bva10g01898 268 MobiDBLite consensus disorder prediction 119 138 - -
Bva10g01898 268 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva10g01898 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Bva10g01898 268 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Bva10g01898 268 SMART sant 13 63 IPR001005 -
Bva10g01898 268 SMART sant 66 114 IPR001005 -
Bva10g01898 268 Gene3D - 68 144 - -
Bva10g01898 268 MobiDBLite consensus disorder prediction 139 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01898 Bva-Chr10 12798803 12800705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01898 1 268 MYB Transcription Factor Family AT2G31180 51.648 6.47e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva10g01898 Myb_DNA-binding 4.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01898 K09422 - gmx:100807569 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01898 10 12798803 12800705 Bva10g01898 10 12798803 12800705 ECH