Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01888 ATGGCAAAGTCATACTATTCTGTCTACCTTTTGTCTTTGCTTTCCTTCTTAGTTGCTCAGTTTCCGGTCGGGGACACTCCAATTTTTGGAGGAAACATGTTGAAAATTGGGGTACCCATTAAGTCTAGTACTTTCCACGAGTTTGTGAATGTAAAATGGAATTGTACAGAACAGAACATACAGAAAATTGGGTACCCAGTTGACAATTTCAGAGCTATAATAGCTAATTTTCTGGACATAGTAGGAAAGATCACTGCTGGCTCTTACTTCCAAAGTCAGTTGATTCCCGGAAAGGTGGGCGATGTAACTATTGATTTGAACGGGATAGCCTTTGTTGGTTTCACGAAGCCATTTAGTGATGAATTAGGCGTGAAGATGCTTGTACAAGTTCAACGCGATGACCACATAAATATGTGGATCTTTCTGCAGCCATTTAGTTGGGATCTTTGGCTAtccatcattttattttgtttctttattggaGTGATAATATTGGTCATGGAAAGTAAGGCaaataaagaaacacaaaCTGAAGATTCATTAGGTCGAAAGCAACTTACAAGAGCATCAGTTTTATGGCTTCCTCTAGCTCAGGCAGTGCTTCCTCAAAGAGAATCGGTTGTCAATAAAAGCTCTAGGTTTGTACTGCTGGTGTGGTTAGGGTTAGCATTCATTCTCATTCAAAGCTACACAACAAGTTTGTACTCAATCTTGACATCACATCAACAGAAGCCAAGTTACCCGTCCTTGGATACTCTgaaaagaaaccaagaaaatgtGGGATATCGAGAAGGTTCTATCGTAAGGAAATTGTTAATAGatcacttaaaatttgatgaatcaaGGCTTCGACGATACTCCACAATTGAACAATATCATGATGCCTTACAAAATGGAACTCGCAGTGGAGGTGTTGCTGCTATTTTTGATCACGCACCCTACATTAATGTCTTCTTAGAAGAATATGGTTCGAAATTTATGATGGCTGGACCTACCTATCGCATTTCTGGCTTTGGATTAGGATTAACGGAtaagattgaagaaaaatatgttggCATCAATCATGATGATCTCCAAGATCAGTATGATCAAATATTTGCTGACACTCCCAGCCTCACCACACAGAGCTTTGCAGGGCTGTTCATGATCACTGGATCCCTTATCTTGCTTGCTTTGCTAGTCTCTGAATGTTGTATTTGTCAGAGGCCTTTGATGATGCTAAAAAATTTCAGCCAAAGAAGTCTTTTCTCCTCATTTACTAAAAAAAGCAATCAATCGAAGGATGGTTCAAAAGGAGGAACCGATGCTGGGtcaaaaaatgaaggaagcAACCATCGAAAATGCCTTCAAAGATCTCTTTCAATGCCTGTTTG 1373 0.3678 MAKSYYSVYLLSLLSFLVAQFPVGDTPIFGGNMLKIGVPIKSSTFHEFVNVKWNCTEQNIQKIGYPVDNFRAIIANFLDIVGKITAGSYFQSQLIPGKVGDVTIDLNGIAFVGFTKPFSDELGVKMLVQVQRDDHINMWIFLQPFSWDLWLSIILFCFFIGVIILVMESKANKETQTEDSLGRKQLTRASVLWLPLAQAVLPQRESVVNKSSRFVLLVWLGLAFILIQSYTTSLYSILTSHQQKPSYPSLDTLKRNQENVGYREGSIVRKLLIDHLKFDESRLRRYSTIEQYHDALQNGTRSGGVAAIFDHAPYINVFLEEYGSKFMMAGPTYRISGFGLGLTDKIEEKYVGINHDDLQDQYDQIFADTPSLTTQSFAGLFMITGSLILLALLVSECCICQRPLMMLKNFSQRSLFSSFTKKSNQSKDGSKGGTDAGSKNEGSNHRKCLQRSLSMPV 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01888 457 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 6 342 - -
Bva10g01888 457 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 342 417 - -
Bva10g01888 457 SUPERFAMILY Periplasmic binding protein-like II 5 352 - -
Bva10g01888 457 MobiDBLite consensus disorder prediction 421 439 - -
Bva10g01888 457 Gene3D - 135 275 - -
Bva10g01888 457 MobiDBLite consensus disorder prediction 421 457 - -
Bva10g01888 457 Pfam Ligand-gated ion channel 146 385 IPR001320 GO:0015276|GO:0016020
Bva10g01888 457 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 6 342 - -
Bva10g01888 457 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 342 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01888 Bva-Chr10 12650673 12658176 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01888 30 394 Ion Channels AT2G29120 31.095 2.44e-50 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01888 K05387 - gmx:100811144 313.153