Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01879 ATGAATCCCTTGGAAGATTGGATGGATCCCATAGAAGATTGGGATTTTCTCGATGAAATATTCGTCGATGATAATCATCCGCCCACAGATTTTGCTTGGAACAATCAGATTCCCAGAGAAAGCACAGAGATTGACTTTTCTGTTGGTACTGTAGCTTCTCAAGAGAGCACCCGGAAGAGGGGACGCACAAATTCATGCAGCAAGCCAGGAACAAAAGCTTGCCGTGAGAAAGTGCGGAGGGAGAAGCTCAATGACAGGTTTGCTGACTTGAGCTTTATTTTGGAACCTGGGAGGTCTGTGAAAGCTGATAAACCAGCTATACTTGATGATGCTATCAGAGTCTTGAACCAACTTAAAACTGAAGCTCAGGAACTCCGAGAAACAAACCAAAAGTTGTTAGaggaaataaaatgtttaaagACAGAGAAAAATGAGCTTCGAGAAGAGAAACTTGTTCTAAAAGCAGATAAAGAGAAGATTGAGAGACAATTGAAAGCTATACCAGTTTCACCTGCTGGGTTTATGCCACCCCATGCGACTCCATACCCAGGTGGTGTCAACAAGATGACCGTTTTTCCCAGTTATGGTTTTATCCCAATGTGGCATTATATGCCTCCAGCTGCTCGCGATACATCGCACGATCATGAACTCAGGCCTCCTGCTGCATA 668 0.4311 MNPLEDWMDPIEDWDFLDEIFVDDNHPPTDFAWNNQIPRESTEIDFSVGTVASQESTRKRGRTNSCSKPGTKACREKVRREKLNDRFADLSFILEPGRSVKADKPAILDDAIRVLNQLKTEAQELRETNQKLLEEIKCLKTEKNELREEKLVLKADKEKIERQLKAIPVSPAGFMPPHATPYPGGVNKMTVFPSYGFIPMWHYMPPAARDTSHDHELRPPAA 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01879 222 SMART finulus 73 124 IPR011598 GO:0046983
Bva10g01879 222 CDD bHLH_AtILR3_like 72 147 - -
Bva10g01879 222 Pfam Helix-loop-helix DNA-binding domain 71 118 IPR011598 GO:0046983
Bva10g01879 222 Gene3D - 71 151 IPR036638 GO:0046983
Bva10g01879 222 PANTHER TRANSCRIPTION FACTOR BHLH104 12 222 - -
Bva10g01879 222 PANTHER BHLH TRANSCRIPTION FACTOR 12 222 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Bva10g01879 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 61 132 IPR036638 GO:0046983
Bva10g01879 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 118 IPR011598 GO:0046983
Bva10g01879 222 Coils Coil 108 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01879 Bva-Chr10 12568657 12571238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01879 55 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 68.639 4.41e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva10g01879 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01879 - - gmx:100787583 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01879 10 12568657 12571238 Bva10g01879 10 12568657 12571238 ECH