Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01864 ATGGAGTCTAATCCCATcgaagaggaagagaagatcGAGAAGGTCCACTCACAAATCGGGTTGGAACTGCCAGAACCGCTTGTCATCAAAGGGCCTTCTGAATCTGCGGGTGGTCCAGATGCCGATGTGAAATATCTGAGCGATGATAATCATGGGTCATCGGTTCCACCATTGGCGGTGATTCGGAAAACCACTAGCTCTGGTGGGGTTCGGGTTTCAGCTCCGATTAACCAAGAGACAGTAGACGACTGTGAAGCATCAGAACTTCGAGAAGACGTAGGTTCCAATGGTTCTCAACCATTAGTTGTGGAAGACTCAGAAGCTCTGAAAACGTCTTTTGACGAGTTTCTTATGGCTACGAATGCTAAAGTCCTGTCGGAGGAAGAAGCAAACGCTGAGTTGAATCCTAGGATTGGAGTCAAAGAAGCTGATTTTGATAGAAAGGAACTGGGGGCTGAAGAGAAGGTCCAAAAGGTTCAATTGCAAATCGGGTCTGAAGTTCCGGAACTGGTTATTCTCAAAGCGCTTTCAGAATCTGGGAGCGACCCAGATGCTGCTGTGAAGTTTCTCAATAATAATCCTGGGTTCTTGGCCCGACCTTTGACTGTGATCCCGCATTCGGCTACGTCAGCACAGCCGCTTGATGAATTGTCTCTGAAAGGCAAGGTAAAGGAGGAGGTTGATGTTGGTTTCCAGAAGCAAGTCTCTGTGAAGAAAGTAATGAGTTCGGATGCTTCTCTGCCATCATGGTCACGGAACGAGATGAAAGGGGTGAAAGTGAAAGAGGAGTGTGGTGAGTCAGAAGTTCGGGAAATGACTTTTGAAGAGTTATGTAAGATTACTAATACTAAACTCCAATCAGTGAAGGAAGAAAAGCcagaaaagaaaccaaaagatCATCCTGTGATGATTTTGGGCAGGCAACGAGTAGAAAGGGAACATGTTACAGTGGCACCTCTTCCAGCTTTTGAGAAACAGCACCaagtgaagaaagaaagaattgaaaataaaatggttaatCCTTCTAATGTAGAAGATGGGGACTTTCAAGAAGAGCCAGAGTGGTTTTTGATTGGAAGATCATTTATAGATGCGTGCTCAACCACAAAAGGCAGGAAATTGGTGGACAATGAGattgtttatttcaattttcctcCGGCTTCAAGATACAAATCGCATTGCATTGTTCGCATTTCAACCAAACGCTCTGGAGAGATTGGAAGACTTCCTATGGAATGGGCCAAACATATCATTCCACTTGTGGATTCTTCCAAGATTAAAGTTCAAGGCCGATGCGTAGCTGCACCGCCGTTTCTTCAGATGATGCAAACCTTCACGGTGTGCCTAAGCTTTTATATTCACCGCTCCATATTCTCAGCGGGAGACAATACAAATTCTTTTAGGTTAGATGCTTGTGCTAACAGTGACTCTACTATTTATCCTCTCCTTACATTGTTCAATTTGCTGGAGCTTCAGCCATGTCAGAAGGCTGAATTTACCCCCGAGTATCTTAATTCTCGCAAGCGGTTGCTTATTTTGGAGGGTAATTCAGTTGAAGGTGCATCAGCTTTGCCCGCGACAAAGCGAAGAAAGGGTTCCCAACAGGATCCGGAACAAGACACGGATATACAAGCCATTTCAGAGTCTTCTTTGAATAAACTTGTTGGAGCTGCAGAAGTCTATGACttgaagGAGATGGAACCCTCAAGCACATTAATGTGTGATTTAAAGCCTTACCAGAAACAAGCTCTCTATTGGATGTCAGAATTAGAAAAGGGAACTGACCTTCAAAATGCTGCAAAAACTCTTCATCCTTGCTGGGCTGAATATCGTTTATGTGATAGAAGGGCTTCCTCAATTTACCTGAACAAGTTCTCAGGGGAAGTAACAACACGATTTCCAGCAGCAACACAGACGGCAAGCGGAGGAATTCTAGCGGATGCGATGGGACTTGGAAAGACTGTTATGACAATTGCTCTAATTCTTGCAAGACCATACATGGGGAGCTCAGAAAATGAGGATGCAGATAATAATACTGAAGTTacaaagaagaggaagaaagattcTCATATTAACACCAGATTCAAACCACAGGGTGGCACTCTTATTGTTTGTCCCATGGCTTTGTTAGGTCAATGGAAGGATGAGCTTGAAACCCATTCAGCACCAgaatctatatctatatttgtTCACTATGGTTGCGGTAGAACCGATAGCCCTGAGATGCTCTCAGAACATGATGTTGTCTTGACAACATATGGTGTTCTACAAGCTGCATATAAACATGCTGGAGAGAATAGCATTTATCAGAGAGTCGATTGGTATAGGGTGGTTCTAGATGAAGCTCATACAATTAAAGCGCATAAAAGCCAGGCTGCCCAGGCTGCTTTTACTTTGTCCTCACACTGCCGATGGTGTCTAACAGGAACTCCTATTCAGAATAGTTTGGAAGACCTATACAGCCTCTTGTGCTTCTTGCATGTGGAACCATGGTGCAACTGGGCTTGGTGGAATAAATTGATCCAGAAGCCTTATGAGAATGGTGATACAAAGGCGTTGAAATTGGTTAAGGCCATTTTGAGGCCACTGATGTTAAGAAGAACGAAGGATACAAAGGATAAGGAAGGAAGGCCCATACTTGTGCTTCCACCAACAGATATTCAAGTAATTGAGTGTCAACAGACAGAAGCTGAACATGACTTCTATTATGCCCTCTTCAAGCGATCTAAAGTACAATTTGACCAGTACGTTGCACAAGGCAAGGTCCTTCACAACTATGCTAACATCCTTGAGCTACTATTACGATTGAGGCAATGTTGCAACCATCCATTTTTGGTCATGAGTCGATGTGATACACAGAAGTATGCAGACTTGGACAAGCTTGCAAGCAGATTCCTTGAGAGTTTTTCTGATTCTGCTCCTGTCCCATCCCTTGCATACATAGAAGAGGTTGTCGATGGTGTCCGGAAGGGTGAAAGCAAAGAGTGCCCCATATGCTTGGAGTCACCGGATGACCCTGTGTTTACCCCATGTGCACATATGATGTGCAGGGAATGCTTACTCTCTAGCTTGAAGACATCAACAGGTGGTCAATGTCCAATATGCCGCAAATGGGTCAAGAAAACTGATCTTATCACTTGTCCAACAGAAAACCGGTTCAGGGTTGATGTTGAGAAGGAATGGAAGGAGTCTGCAAAGATTTCAAAGCTATTTCAGTGCTTGGAAAGCATTAAGAGGTCAGGCTCTGGCGAAAAGAGTATTGTTTTCAGCCAGTGGAGTTCATTTTTTGATCTCCTAGAAATTCCattaaagaaggaaaagattgGCTATTTAAGGTTTGATGGGAAATTGTCTCAAAAGCAGAGAGAAAGAGTCTTAAAGGAATTTAGTGAGACAACAGAGAAAAGGGTTTTATTAATGTCTCTCAAAGCTGGCGGAGTCGGCTTGAATCTAACTGCAGCATCAAATGTCTTCCTCATGGATCCATGGTGGAATCCAGCAGTAGAGGAGCAAGCCATTATGAGAATCCACCGTATAGGACAAAAGAGAACAGTTCGTGTTAGAAGATTCATCGTCAAAGACACTGTTGAGGAGCGTATGCAACAAGTTCAGGCCAAGAAGCAGAGAATGATCTCTGGAGCCCTCACTGACGAGGAGGTCCGTTCTGCAAGAATTGAAGAACTCAAAATGCTCTTCAGATG 3701 0.4231 MESNPIEEEEKIEKVHSQIGLELPEPLVIKGPSESAGGPDADVKYLSDDNHGSSVPPLAVIRKTTSSGGVRVSAPINQETVDDCEASELREDVGSNGSQPLVVEDSEALKTSFDEFLMATNAKVLSEEEANAELNPRIGVKEADFDRKELGAEEKVQKVQLQIGSEVPELVILKALSESGSDPDAAVKFLNNNPGFLARPLTVIPHSATSAQPLDELSLKGKVKEEVDVGFQKQVSVKKVMSSDASLPSWSRNEMKGVKVKEECGESEVREMTFEELCKITNTKLQSVKEEKPEKKPKDHPVMILGRQRVEREHVTVAPLPAFEKQHQVKKERIENKMVNPSNVEDGDFQEEPEWFLIGRSFIDACSTTKGRKLVDNEIVYFNFPPASRYKSHCIVRISTKRSGEIGRLPMEWAKHIIPLVDSSKIKVQGRCVAAPPFLQMMQTFTVCLSFYIHRSIFSAGDNTNSFRLDACANSDSTIYPLLTLFNLLELQPCQKAEFTPEYLNSRKRLLILEGNSVEGASALPATKRRKGSQQDPEQDTDIQAISESSLNKLVGAAEVYDLKEMEPSSTLMCDLKPYQKQALYWMSELEKGTDLQNAAKTLHPCWAEYRLCDRRASSIYLNKFSGEVTTRFPAATQTASGGILADAMGLGKTVMTIALILARPYMGSSENEDADNNTEVTKKRKKDSHINTRFKPQGGTLIVCPMALLGQWKDELETHSAPESISIFVHYGCGRTDSPEMLSEHDVVLTTYGVLQAAYKHAGENSIYQRVDWYRVVLDEAHTIKAHKSQAAQAAFTLSSHCRWCLTGTPIQNSLEDLYSLLCFLHVEPWCNWAWWNKLIQKPYENGDTKALKLVKAILRPLMLRRTKDTKDKEGRPILVLPPTDIQVIECQQTEAEHDFYYALFKRSKVQFDQYVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRCDTQKYADLDKLASRFLESFSDSAPVPSLAYIEEVVDGVRKGESKECPICLESPDDPVFTPCAHMMCRECLLSSLKTSTGGQCPICRKWVKKTDLITCPTENRFRVDVEKEWKESAKISKLFQCLESIKRSGSGEKSIVFSQWSSFFDLLEIPLKKEKIGYLRFDGKLSQKQRERVLKEFSETTEKRVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRTVRVRRFIVKDTVEERMQQVQAKKQRMISGALTDEEVRSARIEELKMLFR 1233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01864 1233 Pfam Helicase conserved C-terminal domain 1069 1180 IPR001650 -
Bva10g01864 1233 CDD DEXDc_SHPRH-like 576 867 - -
Bva10g01864 1233 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1069 1233 IPR001650 -
Bva10g01864 1233 SMART ring_2 996 1035 IPR001841 -
Bva10g01864 1233 MobiDBLite consensus disorder prediction 670 694 - -
Bva10g01864 1233 MobiDBLite consensus disorder prediction 24 100 - -
Bva10g01864 1233 ProSiteProfiles Zinc finger RING-type profile. 996 1036 IPR001841 -
Bva10g01864 1233 PANTHER DNA REPAIR PROTEIN RAD5B 528 1233 - -
Bva10g01864 1233 SMART HIRAN_2 358 453 IPR014905 GO:0003676|GO:0008270|GO:0016818
Bva10g01864 1233 Pfam Zinc finger, C3HC4 type (RING finger) 993 1041 - -
Bva10g01864 1233 Gene3D - 883 1233 IPR027417 -
Bva10g01864 1233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 563 867 IPR027417 -
Bva10g01864 1233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 880 1222 IPR027417 -
Bva10g01864 1233 SUPERFAMILY RING/U-box 994 1048 - -
Bva10g01864 1233 ProSitePatterns Zinc finger RING-type signature. 1011 1020 IPR017907 -
Bva10g01864 1233 CDD SF2_C_SNF 1060 1191 - -
Bva10g01864 1233 Pfam SNF2-related domain 579 945 IPR000330 GO:0005524|GO:0140658
Bva10g01864 1233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 989 1045 IPR013083 -
Bva10g01864 1233 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 528 1233 - -
Bva10g01864 1233 Pfam HIRAN domain 359 447 IPR014905 GO:0003676|GO:0008270|GO:0016818
Bva10g01864 1233 SMART helicmild6 1097 1180 IPR001650 -
Bva10g01864 1233 Gene3D - 632 868 IPR038718 -
Bva10g01864 1233 MobiDBLite consensus disorder prediction 523 544 - -
Bva10g01864 1233 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 634 829 IPR014001 -
Bva10g01864 1233 SMART ultradead3 572 846 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01864 Bva-Chr10 12493303 12500179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01864 209 1233 RAD5 or RAD16-like Gene Family AT5G43530 61.847 0.0 1311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bva10g01864 SNF2_N 5.1e-84 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01864 K15505 - qsu:111993891 1402.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01864 10 12493303 12500179 Bva10g01864 10 12493303 12500179 ECH