Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01857 ATGGAGAGAAACGGTTTGAGCACCAGCTTGAAATACCATAAGAGCACTGTCATCAATAGTCCTACAAAGGAGTCCAGCTATGGCAACTACAGCAACAAGGACAAAATGGTGAAAGAATCTTGGGACTGTAACTCTCAGAGTAATGGAGAGGACTACCTGAGTGGCTTCTCATGGCCTCCAAGGTCATATACTTGTAGCTTCTGCAAAAGAGAATTTAGATCTGCTCAGGCACTTGGTGGCCATATGAATGTTCACAGAAGGGATAGAGCCAGGCTGAGACAGTCTCCTCCAACTGACGGTCAAGCTCCAATCCTTAACCTTAATCTTAACCCTACATCTAACACTATCTTCTCAACCTCATCTATGTCCTTactatcatcatcatcatcatcatcatcttcttcttccactAGGCTCAAACCTTGCACTTGCACATTACCCTCCTTGGTTTCTCatactctttcttcttcatcttctccttcttctgcCTGTCCTGAGGTGAAAAAATTTGTGAATGGTATCCTATTGAACCCTTTGAACCCAAAAGCCTCAGATTcaataaagttgaaaaatgCAGAACCTTTATCTGGGTTTAGAGAATATGATACTTTTGCTCGAGAAAATGGGTGCAAAATGTTGAAAAAGGCTGAGATCATTACATTGGACTTGGATGTTGGTTTGCTTAGTGATTCTAAGGAGGACTTAGATCTGGAGCTTCGATTGGGTACCTATCCTTA 737 0.3758 MERNGLSTSLKYHKSTVINSPTKESSYGNYSNKDKMVKESWDCNSQSNGEDYLSGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRQSPPTDGQAPILNLNLNPTSNTIFSTSSMSLLSSSSSSSSSSSTRLKPCTCTLPSLVSHTLSSSSSPSSACPEVKKFVNGILLNPLNPKASDSIKLKNAEPLSGFREYDTFARENGCKMLKKAEIITLDLDVGLLSDSKEDLDLELRLGTYP 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01857 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Bva10g01857 245 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 29 243 - -
Bva10g01857 245 SUPERFAMILY beta-beta-alpha zinc fingers 60 89 IPR036236 -
Bva10g01857 245 Pfam C2H2-type zinc finger 63 87 - -
Bva10g01857 245 Gene3D Classic Zinc Finger 59 102 - -
Bva10g01857 245 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Bva10g01857 245 SMART c2h2final6 63 85 IPR013087 -
Bva10g01857 245 PANTHER OS07G0101800 PROTEIN 29 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01857 Bva-Chr10 12403308 12404045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01857 1 242 C2H2 Transcription Factor Family AT3G23130 40.650 7.33e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva10g01857 zf-C2H2_6 4.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01857 - - vvi:100263211 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01857 10 12403308 12404045 Bva10g01857 10 12403308 12404045 ECH