Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01822 ATGGCAACTTTGATTGCGAAGGAGCATGGGTTGAATCTGAAGGAGACTGAGTTGTGTTTGGGATTGCCTGGTGGTGGCGGAACTGATCAGGTGGAGACACCGAAGGCCACCGGAAAGAGAGGCTTCTCTGAGACTGTTGATCTCAAGCTCAATCTTCAATCCAAGGAAGATctgaatgaaaatttgaagaatgctTCAAAGGAGAAGAGCCTTCTCAAGGACCCTGCTAAGCCCCCAGCCAAGGCTCAAGTGGTGGGGTGGCCACCAGTGCGTTCCTACAGGAAGAACGCAATGGCACAGAAGGTTAACAGTGAAGAAGGGAATAATAGCGAGAAGAACACAAGCTCTTCTGCAGCTGGAGCATTTGTGAAGGTTTGCATGGATGGTGCACCCTACCTTCGTAAGGTGGACTTGAAAATGTACAAAAGCTACCAAGAACTATCTGATGCCTTGGCCAAGATGTTCAGCTCCTTCACCATGGGTGAATATGGGACCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGAGTCATGCAAGCGTCTGCGAATCATGAAAGGATCAGAAGCTATCGGACTTGCCCCAAGAGCCATggaaaaatgcaaaagcaGAAGCTG 716 0.4623 MATLIAKEHGLNLKETELCLGLPGGGGTDQVETPKATGKRGFSETVDLKLNLQSKEDLNENLKNASKEKSLLKDPAKPPAKAQVVGWPPVRSYRKNAMAQKVNSEEGNNSEKNTSSSAAGAFVKVCMDGAPYLRKVDLKMYKSYQELSDALAKMFSSFTMGEYGTQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKSRS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01822 238 Pfam AUX/IAA family 35 229 IPR033389 -
Bva10g01822 238 MobiDBLite consensus disorder prediction 61 84 - -
Bva10g01822 238 Gene3D - 114 232 - -
Bva10g01822 238 MobiDBLite consensus disorder prediction 61 75 - -
Bva10g01822 238 PANTHER AUXIN-RESPONSIVE PROTEIN IAA14 7 231 - -
Bva10g01822 238 Coils Coil 45 68 - -
Bva10g01822 238 SUPERFAMILY CAD & PB1 domains 118 219 - -
Bva10g01822 238 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 231 IPR003311 GO:0005634|GO:0006355
Bva10g01822 238 ProSiteProfiles PB1 domain profile. 120 220 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01822 Bva-Chr10 12144602 12146950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01822 106 228 B3 DNA Binding Superfamily AT4G23980 32.258 3.23e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Bva10g01822 AUX_IAA 1.3e-84 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01822 10 12144602 12146950 Bva10g01822 10 12144602 12146950 ECH
Bva10g01822 10 12144602 12146950 Bva04g02833 04 24283820 24286074 ECH