Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva10g01821 atggaaaacacAGTGGCTTATGGAAACGATCTGAACCTCAAGGCAACTGAGCTGAGATTGGGGTTACCAGGGACAgaggaaagagaggaaaaggTACTGCGTAACGCTATGAAGAACAACAAGAGGCCATTGCCTGAGTCTTCTCAAGAGTGTGGATCAAagaaaacttctccacaagatGAGGAAAGTGAAGCTGCCCCACCTGCCAAGGCAAAGATAGTTGGGTGGCCACCAATCAGATCCTACAGGAAAAACAGCTTGCAGGAGGCTGAAGGTGCTGGAATTTATGTCAAAGTAAGCATGGATGGTGCCCCTTATCTCAGAAAAATTGACTTGAGGGTCTATGGAGGTTATCCACAACTCCTCAAAGCTCTGGAAAACATGTTCAAGTTAACCATAGGTGAGTACTCTGAAAGAGAGGGCTACAAGGGATCAGAATATGCACCTACATATGAAGACAAGGATGGTGATTGGATGCTAGTTGGAGATGTTCCATGGGATATGTTCATCACTTCCTGCAAGAGGCTAAGAATCATGAAAGGATCAGAAGCTAAAGGCTTGGCTTGTGGGGTTTG 575 0.4209 MENTVAYGNDLNLKATELRLGLPGTEEREEKVLRNAMKNNKRPLPESSQECGSKKTSPQDEESEAAPPAKAKIVGWPPIRSYRKNSLQEAEGAGIYVKVSMDGAPYLRKIDLRVYGGYPQLLKALENMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFITSCKRLRIMKGSEAKGLACGV 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva10g01821 191 ProSiteProfiles PB1 domain profile. 94 181 IPR000270 GO:0005515
Bva10g01821 191 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 188 IPR003311 GO:0005634|GO:0006355
Bva10g01821 191 MobiDBLite consensus disorder prediction 33 70 - -
Bva10g01821 191 Gene3D - 88 191 - -
Bva10g01821 191 SUPERFAMILY CAD & PB1 domains 85 180 - -
Bva10g01821 191 PANTHER AUXIN-INDUCED PROTEIN 10 188 - -
Bva10g01821 191 Pfam AUX/IAA family 52 188 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva10g01821 Bva-Chr10 12128248 12129769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva10g01821 97 187 B3 DNA Binding Superfamily AT2G46530 37.363 4.35e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Bva10g01821 AUX_IAA 9.3e-54 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva10g01821 K14484 - gmx:100527777 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva10g01821 10 12128248 12129769 Bva10g01821 10 12128248 12129769 ECH
Bva10g01821 10 12128248 12129769 Bva04g02834 04 24291888 24293077 ECH